SitesBLAST
Comparing PP_4434 FitnessBrowser__Putida:PP_4434 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6pxsA Crystal structure of iminodiacetate oxidase (idaa) from chelativorans sp. Bnc1 (see paper)
25% identity, 97% coverage: 1:417/432 of query aligns to 1:364/370 of 6pxsA
- binding flavin-adenine dinucleotide: G7 (= G7), G9 (= G9), I10 (≠ V10), D30 (= D30), N32 (≠ D33), H33 (≠ G34), K36 (≠ M37), A37 (≠ E38), T38 (= T39), A40 (= A42), G41 (≠ N43), A42 (= A44), G43 (= G45), V44 (≠ Q46), Y174 (vs. gap), A203 (≠ L253), W206 (≠ Y256), I210 (≠ M260), Y250 (= Y298), G305 (= G354), R307 (= R356), G333 (= G381), A334 (≠ T382), S335 (≠ L383), G336 (= G384), L337 (≠ W385), T338 (= T386)
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
26% identity, 74% coverage: 108:425/432 of query aligns to 81:409/824 of Q8GAI3
Sites not aligning to the query:
- 66 mutation W->F,S: Contains a non-covalently bound FAD. Loss of enzyme activity.
- 67 H→A: Contains a non-covalently bound FAD. Exhibits about 10% of the wild-type enzyme activity.
Q5L2C2 Glycine oxidase; GO; GOX; GOXK; EC 1.4.3.19 from Geobacillus kaustophilus (strain HTA426)
25% identity, 69% coverage: 120:416/432 of query aligns to 78:370/377 of Q5L2C2
- V180 (≠ N223) binding
- R309 (= R356) binding
- 334:340 (vs. 380:386, 29% identical) binding
- R336 (≠ T382) binding
Sites not aligning to the query:
- 14:15 binding
- 34:35 binding
- 42:43 binding
- 47:49 binding
4yshB Crystal structure of glycine oxidase from geobacillus kaustophilus
25% identity, 69% coverage: 120:416/432 of query aligns to 77:368/368 of 4yshB
- active site: I262 (≠ V311), L283 (= L332), G305 (= G354), N335 (≠ L383), L338 (≠ T386)
- binding flavin-adenine dinucleotide: V178 (≠ N223), S206 (≠ L253), W209 (≠ Y256), R307 (= R356), H332 (= H380), R334 (≠ T382), N335 (≠ L383), G336 (= G384), I337 (≠ W385), L338 (≠ T386)
- binding glycine: G249 (≠ Y298), Y251 (≠ V300), Y251 (≠ V300), A264 (≠ G313), R307 (= R356), R334 (≠ T382), R334 (≠ T382)
Sites not aligning to the query:
- active site: 45, 48, 49, 52
- binding flavin-adenine dinucleotide: 9, 10, 12, 14, 32, 33, 34, 40, 41, 42, 45, 46, 48
4yshA Crystal structure of glycine oxidase from geobacillus kaustophilus
25% identity, 69% coverage: 120:416/432 of query aligns to 77:368/370 of 4yshA
- active site: I262 (≠ V311), L283 (= L332), G305 (= G354), N335 (≠ L383), L338 (≠ T386)
- binding flavin-adenine dinucleotide: V178 (≠ N223), S206 (≠ L253), G207 (= G254), W209 (≠ Y256), R307 (= R356), H332 (= H380), R334 (≠ T382), N335 (≠ L383), G336 (= G384), I337 (≠ W385)
Sites not aligning to the query:
- active site: 45, 48, 49, 52
- binding flavin-adenine dinucleotide: 10, 12, 14, 32, 33, 34, 40, 41, 42, 45, 46, 47, 48
2gagB Heteroteterameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution (see paper)
22% identity, 74% coverage: 111:431/432 of query aligns to 79:402/403 of 2gagB
- binding flavin-adenine dinucleotide: V195 (≠ I224), G224 (≠ L253), A225 (≠ G254), H227 (≠ Y256), L231 (≠ M260), L246 (= L278), G352 (= G381), T353 (= T382), G354 (≠ L383), G355 (= G384), F356 (≠ W385), K357 (≠ T386)
- binding flavin mononucleotide: H171 (≠ C200), V250 (≠ I282), E278 (≠ G313), R321 (≠ T350), W323 (= W352)
- binding 2-furoic acid: M263 (≠ D295), Y270 (≠ F305), K357 (≠ T386), V401 (≠ T430)
- binding sulfite ion: K170 (≠ D199), K276 (≠ V311)
Sites not aligning to the query:
- active site: 61, 64, 65
- binding flavin-adenine dinucleotide: 26, 28, 29, 30, 51, 52, 58, 59, 60, 62, 63, 64, 66
- binding flavin mononucleotide: 61, 62
- binding 2-furoic acid: 64, 66, 68
3ad8B Heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with pyrrole 2-carboxylate (see paper)
22% identity, 69% coverage: 134:431/432 of query aligns to 103:403/404 of 3ad8B
- active site: G326 (= G354), K358 (≠ T386)
- binding flavin-adenine dinucleotide: V196 (≠ I224), G225 (≠ L253), A226 (≠ G254), H228 (≠ Y256), L247 (= L278), G353 (= G381), T354 (= T382), G355 (≠ L383), G356 (= G384), F357 (≠ W385), K358 (≠ T386)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I282), E279 (≠ G313), R322 (≠ T350), W324 (= W352)
- binding pyrrole-2-carboxylate: M264 (≠ D295), Y271 (≠ F305), T354 (= T382), K358 (≠ T386), V402 (≠ T430)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
- binding pyrrole-2-carboxylate: 65, 67, 69
3ad7B Heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with methylthio acetate (see paper)
22% identity, 69% coverage: 134:431/432 of query aligns to 103:403/404 of 3ad7B
- active site: G326 (= G354), K358 (≠ T386)
- binding flavin-adenine dinucleotide: V196 (≠ I224), G225 (≠ L253), A226 (≠ G254), H228 (≠ Y256), L247 (= L278), G353 (= G381), T354 (= T382), G355 (≠ L383), G356 (= G384), F357 (≠ W385), K358 (≠ T386)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I282), K277 (≠ V311), E279 (≠ G313), R322 (≠ T350), W324 (= W352)
- binding [methylthio]acetate: M264 (≠ D295), Y271 (≠ F305), T354 (= T382), K358 (≠ T386), V402 (≠ T430)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
- binding [methylthio]acetate: 67, 69
Q50LF2 Sarcosine oxidase subunit beta; Sarcosine oxidase subunit B; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit beta; Tetrameric sarcosine oxidase subunit beta; TSOX subunit beta; EC 1.5.3.24 from Corynebacterium sp. (strain U-96) (see 4 papers)
22% identity, 69% coverage: 134:431/432 of query aligns to 104:404/405 of Q50LF2
- K172 (≠ D199) mutation to A: Retains 39% of wild-type activity.; mutation to D: Retains 32% of wild-type activity.; mutation to R: Retains 58% of wild-type activity.
- H173 (≠ C200) modified: Tele-8alpha-FMN histidine
- V197 (≠ I224) binding
- H270 (≠ T303) mutation to A: 10-fold decrease in catalytic efficiency.
- Y272 (≠ F305) mutation to A: 13000-fold decrease in catalytic efficiency.; mutation to F: 130-fold decrease in catalytic efficiency.
- G354 (= G381) binding
- G357 (= G384) binding
- K359 (≠ T386) binding ; mutation K->A,D: Loss of activity.; mutation to R: Retains 0.07% of wild-type activity. Shows higher apparent KM for sarcosine.
Sites not aligning to the query:
- 31 binding
- 32 binding
- 53 binding
- 61 binding
- 62 binding
- 66 binding
- 68 binding
P40875 Sarcosine oxidase subunit beta; Sarcosine oxidase subunit B; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit beta; Tetrameric sarcosine oxidase subunit beta; TSOX subunit beta; EC 1.5.3.24 from Corynebacterium sp. (strain P-1) (see 3 papers)
22% identity, 74% coverage: 111:431/432 of query aligns to 81:404/405 of P40875
- C146 (≠ E176) mutation to S: No change in activity.
- H173 (≠ C200) modified: Tele-8alpha-FMN histidine; mutation to N: Prevents covalent attachment of FMN. Loss of activity. The mutant is considerably less stable than wild-type enzyme, the beta and delta subunits are lost during purification, which yields a stable alpha-gamma complex.
- H175 (≠ M202) mutation to A: No effect on FMN binding and activity.
- C195 (= C222) mutation to S: No change in activity.
- C351 (≠ T378) mutation to A: No change in activity.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 30 G→A: Prevents covalent attachment of FMN. Blocks subunit assembly.
1vrqB Crystal structure of heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with folinic acid (see paper)
22% identity, 69% coverage: 134:430/432 of query aligns to 103:402/402 of 1vrqB
- active site: G326 (= G354), K358 (≠ T386)
- binding n,n-dimethylglycine: K358 (≠ T386), A401 (= A429)
- binding flavin-adenine dinucleotide: V196 (≠ I224), A224 (= A252), G225 (≠ L253), H228 (≠ Y256), L247 (= L278), G353 (= G381), T354 (= T382), G355 (≠ L383), G356 (= G384), F357 (≠ W385), K358 (≠ T386)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I282), E279 (≠ G313), R322 (≠ T350), W324 (= W352)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding n,n-dimethylglycine: 65, 67, 69
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 51, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
21% identity, 65% coverage: 122:403/432 of query aligns to 72:348/363 of 7cyxA
- binding flavin-adenine dinucleotide: V171 (≠ I224), G200 (≠ L253), G201 (= G254), W203 (≠ Y256), G298 (= G354), R300 (= R356), P301 (= P357), Y326 (≠ G381), R327 (≠ T382), N328 (≠ L383), G329 (= G384), I330 (≠ W385)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 7, 8, 10, 11, 12, 30, 31, 32, 38, 39, 40, 43, 45, 46
6j39A Crystal structure of cmis2 with inhibitor (see paper)
27% identity, 75% coverage: 92:416/432 of query aligns to 44:368/368 of 6j39A
- binding (3R)-3-[(carboxymethyl)sulfanyl]nonanoic acid: M44 (= M92), P46 (≠ R94), N49 (= N97), R243 (≠ S291), Y252 (≠ V300), Y267 (≠ A315), R308 (= R356), R334 (≠ T382), I335 (≠ L383)
- binding flavin-adenine dinucleotide: M44 (= M92), A174 (≠ E228), A203 (≠ L253), W206 (≠ Y256), I228 (≠ S277), Y252 (≠ V300), R308 (= R356), S333 (≠ G381), R334 (≠ T382), I335 (≠ L383), G336 (= G384), V337 (≠ W385), Q338 (≠ T386)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 7, 9, 10, 11, 29, 30, 31, 32, 36, 37, 38, 40, 41, 42, 43
6j38A Crystal structure of cmis2 (see paper)
27% identity, 75% coverage: 92:416/432 of query aligns to 44:368/368 of 6j38A
- binding flavin-adenine dinucleotide: M44 (= M92), A174 (≠ E228), A203 (≠ L253), W206 (≠ Y256), G226 (= G275), G306 (= G354), R308 (= R356), S333 (≠ G381), R334 (≠ T382), I335 (≠ L383), G336 (= G384), V337 (≠ W385), Q338 (≠ T386)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 7, 9, 11, 29, 30, 31, 36, 37, 38, 41, 42, 43
5i39A High resolution structure of l-amino acid deaminase from proteus vulgaris with the deletion of the specific insertion sequence (see paper)
23% identity, 96% coverage: 3:416/432 of query aligns to 27:383/383 of 5i39A
- active site: F66 (≠ Y51), Q69 (≠ K63), A70 (= A64), Q248 (≠ S277), P267 (≠ E296)
- binding flavin-adenine dinucleotide: V30 (≠ L6), G31 (= G7), G33 (= G9), I34 (≠ V10), L35 (≠ V11), V53 (= V29), E54 (≠ D30), K55 (≠ R31), Q62 (≠ V47), S63 (= S48), F66 (≠ Y51), Y67 (≠ A52), Q69 (≠ K63), A196 (≠ N223), A197 (≠ I224), G226 (≠ L253), G227 (= G254), W229 (≠ Y256), Q248 (≠ S277), Q250 (≠ T279), G321 (= G354), M323 (≠ R356), T348 (≠ H380), G349 (= G381), W350 (≠ L383), G351 (= G384), M352 (≠ W385), T353 (= T386)
O31616 Glycine oxidase; GO; EC 1.4.3.19 from Bacillus subtilis (strain 168) (see 3 papers)
24% identity, 50% coverage: 186:403/432 of query aligns to 136:350/369 of O31616
- V174 (≠ I224) binding
- H244 (≠ Y298) mutation to A: 2-fold decrease in catalytic efficiency on glycine and similar catalytic efficiency on glyphosate. 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with S-51 and R-54.
- R302 (= R356) binding
- 327:333 (vs. 380:386, 29% identical) binding
- R329 (≠ T382) binding
Sites not aligning to the query:
- 14:15 binding
- 34:35 binding
- 42:43 binding
- 47:49 binding
- 51 G→R: 130-fold decrease in catalytic efficiency on glycine and 28-fold increase in that on glyphosate.; G→S: 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with R-54 and A-244.
- 54 A→R: 20-fold decrease in catalytic efficiency on glycine and 34-fold increase in that on glyphosate. 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with S-51 and A-244.
1ng3A Complex of thio (glycine oxidase) with acetyl-glycine (see paper)
24% identity, 50% coverage: 186:403/432 of query aligns to 136:350/364 of 1ng3A
- binding acetylamino-acetic acid: Y246 (≠ V300), R302 (= R356), R329 (≠ T382)
- binding flavin-adenine dinucleotide: V174 (≠ I224), S202 (≠ L253), G203 (= G254), W205 (≠ Y256), F209 (≠ M260), G300 (= G354), R302 (= R356), H327 (= H380), R329 (≠ T382), N330 (≠ L383), G331 (= G384), I332 (≠ W385)
- binding phosphate ion: R254 (= R308)
Sites not aligning to the query:
- active site: 47, 48, 49
- binding flavin-adenine dinucleotide: 11, 13, 15, 33, 34, 35, 41, 42, 43, 46, 47, 48, 49
- binding phosphate ion: 89
S5FMM4 Glycine oxidase; GO; BliGO; EC 1.4.3.19 from Bacillus licheniformis (see paper)
24% identity, 56% coverage: 165:405/432 of query aligns to 118:352/369 of S5FMM4
- S202 (≠ L253) mutation to C: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, V-332 and V-342.
- I332 (≠ W385) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-342.
- M342 (≠ L395) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-332.
Sites not aligning to the query:
- 51 G→S: Shows 4.3- and 107-fold increase of affinity to glyphosate and glycine, respectively. Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with R-54, R-81, C-202, V-332 and V-342.
- 54 A→R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-81, C-202, V-332 and V-342.
- 81 K→R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, C-202, V-332 and V-342.
3if9A Crystal structure of glycine oxidase g51s/a54r/h244a mutant in complex with inhibitor glycolate (see paper)
24% identity, 50% coverage: 186:403/432 of query aligns to 136:350/364 of 3if9A
- binding flavin-adenine dinucleotide: P173 (≠ N223), V174 (≠ I224), S202 (≠ L253), G203 (= G254), W205 (≠ Y256), F209 (≠ M260), G300 (= G354), R302 (= R356), H327 (= H380), F328 (≠ G381), R329 (≠ T382), N330 (≠ L383), G331 (= G384), I332 (≠ W385)
- binding glycolic acid: Y246 (≠ V300), R302 (= R356), R329 (≠ T382)
Sites not aligning to the query:
- active site: 47, 48, 49
- binding flavin-adenine dinucleotide: 11, 13, 15, 34, 35, 42, 43, 46, 47, 48, 49
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
22% identity, 73% coverage: 104:417/432 of query aligns to 55:369/374 of 1y56B
- active site: H224 (≠ G275), P239 (= P289), G305 (= G354), M338 (≠ T386)
- binding flavin-adenine dinucleotide: E170 (≠ N223), V171 (≠ I224), T200 (≠ L253), N201 (≠ G254), W203 (≠ Y256), G305 (= G354), Y306 (≠ L355), Y307 (≠ R356), G334 (≠ T382), H335 (≠ L383), G336 (= G384), F337 (≠ W385), M338 (≠ T386)
- binding flavin mononucleotide: I260 (≠ R310), R301 (≠ T350), W303 (= W352)
Sites not aligning to the query:
- active site: 44, 47, 48
- binding flavin-adenine dinucleotide: 11, 13, 14, 15, 33, 34, 35, 42, 43, 45, 46, 47, 49
- binding flavin mononucleotide: 44, 45
Query Sequence
>PP_4434 FitnessBrowser__Putida:PP_4434
MRVLILGSGVVGTVSAYYLAREGFEVVVVDRQDGPAMETSFANAGQVSPGYASPWSAPGV
PLKAIRWMLQQHAPLAIKPTSSLDQYRWMIQMLRNCNPASYAVNKERMVRISEYSRDCLD
ELRAETGISYEARQLGTTQLFRTQAQVDNAAKDIAILKQSGVPFELLDRDGIAKAEPALA
SVRDKLAGALRLPNDQTGDCQMFTRKLAKMAEELGVEFRFGCNIDRLECSGDTISGVWID
GKLEVADQYVLALGSYSPHMLKPLGIQAPIYPLKGYSLTIPITDASMAPSSTILDETYKV
AITRFDDRIRVGGMAEIAGFDLSLNARRRDTLELVVGDLYPKGGDLTKATFWTGLRPATP
DGTPIVGKTKYRNLFLNTGHGTLGWTMSCGSGRLLADLMAGKKPKISAKGLDISRYSNQK
EAHNHGNPATAL
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory