Comparing PP_4620 FitnessBrowser__Putida:PP_4620 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
5ti1H Crystal structure of fumarylacetoacetate hydrolase from burkholderia xenovorans lb400
51% identity, 98% coverage: 8:429/430 of query aligns to 14:428/430 of 5ti1H
P16930 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens (Human) (see 14 papers)
47% identity, 96% coverage: 18:429/430 of query aligns to 10:415/419 of P16930
Sites not aligning to the query:
1hyoB Crystal structure of fumarylacetoacetate hydrolase complexed with 4- (hydroxymethylphosphinoyl)-3-oxo-butanoic acid (see paper)
47% identity, 96% coverage: 18:429/430 of query aligns to 12:417/419 of 1hyoB
P35505 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Mus musculus (Mouse) (see 3 papers)
47% identity, 96% coverage: 18:429/430 of query aligns to 10:415/419 of P35505
2hzyA Mouse fumarylacetoacetate hydrolase complexes with a transition-state mimic of the complete substrate (see paper)
47% identity, 96% coverage: 18:429/430 of query aligns to 10:415/416 of 2hzyA
1qcoA Crystal structure of fumarylacetoacetate hydrolase complexed with fumarate and acetoacetate (see paper)
47% identity, 96% coverage: 18:429/430 of query aligns to 10:415/416 of 1qcoA
8gstC Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Pyruvate bound-form) (see paper)
27% identity, 40% coverage: 200:371/430 of query aligns to 122:251/290 of 8gstC
Sites not aligning to the query:
8gsrA Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) (see paper)
27% identity, 40% coverage: 200:371/430 of query aligns to 122:251/290 of 8gsrA
>PP_4620 FitnessBrowser__Putida:PP_4620
MNHSANARSWVEHANGHSDFPLQNLPLGIFSRPGEARRCGVAIGDAILDLEAVLAAGLFD
GAAKAAVEATRGGALNAFFAMGRNARVALRERLQVLLGEHSEHQAALKPALLPASDCQLH
VPAQIGDYTDFYVGIEHAKNVGKLFRPDNPLLPNYKYVPIGYHGRASTIRPSGTDVRRPK
GQTLPAGHTEPSFGPCARLDYELELGIWIGQGNDMGQAIPVGDAAEHVAGLCLLNDWSAR
DIQAWEYQPLGPFLSKSFITTISPWVVTAEALEPFRCAQPARPEGDPQPLSYLLDKRDQA
SGAFDIELEVLLLTERMREQGIAPHRLTLSNTRSMYWTVAQLVAHHSVNGCQLQPGDLFG
SGTLSGATPGSFGSLLEITEGGKLPVELASGEVRKFLEDGDEIILRARCTRDGVASIGFG
ECRGTVIAAN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory