SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_5029 FitnessBrowser__Putida:PP_5029 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
26% identity, 86% coverage: 4:232/267 of query aligns to 5:249/280 of 2q7sB

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Query Sequence

>PP_5029 FitnessBrowser__Putida:PP_5029
MDKVLSFHQGRLPLLISMPHAGLRLTDAVRDGLVDQAQSLPDTDWHIPQLYDFARDMGAS
VVAAEYSRFVIDLNRPEDDKPLYVGATTGLYPATLFGGEPLFKDGLAPSGEERKRYLEQI
WRPYHTTIRRELDRLREQFGYALLWDAHSIRSLIPHLFDGKLPDFNLGTFNGASCDPALA
DRLQGVCAKVQGYNHVLNGRFKGGHITRHYGDPANHIHAVQLELAQSTYMEEVEPFAYRE
DLAQPTQAVLRQLLQALLAWGDERYKR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory