SitesBLAST
Comparing PP_5273 FitnessBrowser__Putida:PP_5273 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
22% identity, 79% coverage: 48:388/430 of query aligns to 22:352/374 of 1y56B
- active site: F44 (≠ G70), G47 (= G81), T48 (≠ H82), H224 (vs. gap), P239 (= P276), G305 (= G341), M338 (≠ N374)
- binding flavin-adenine dinucleotide: I33 (≠ L59), E34 (= E60), K35 (≠ A61), S42 (≠ A68), T43 (≠ S69), R45 (= R71), C46 (≠ V80), G47 (= G81), G49 (= G83), E170 (= E210), V171 (= V211), T200 (≠ C238), N201 (= N239), W203 (≠ Y241), G305 (= G341), Y306 (≠ M342), Y307 (≠ I343), G334 (= G370), H335 (= H371), G336 (= G372), F337 (≠ L373), M338 (≠ N374)
- binding flavin mononucleotide: F44 (≠ G70), R45 (= R71), I260 (vs. gap), R301 (≠ Y337), W303 (= W339)
Sites not aligning to the query:
5i39A High resolution structure of l-amino acid deaminase from proteus vulgaris with the deletion of the specific insertion sequence (see paper)
22% identity, 87% coverage: 20:391/430 of query aligns to 9:370/383 of 5i39A
- active site: F66 (≠ N72), Q69 (= Q75), A70 (≠ L76), Q248 (≠ R270), P267 (≠ D289)
- binding flavin-adenine dinucleotide: V30 (≠ I36), G31 (= G37), G33 (= G39), I34 (≠ Y40), L35 (≠ S41), V53 (≠ L59), E54 (= E60), K55 (≠ A61), Q62 (≠ A68), S63 (= S69), F66 (≠ N72), Y67 (≠ G73), Q69 (= Q75), A196 (≠ E210), A197 (≠ V211), G226 (≠ C238), G227 (≠ N239), W229 (≠ Y241), Q248 (≠ R270), Q250 (≠ R272), G321 (= G341), M323 (≠ I343), T348 (≠ S369), G349 (= G370), W350 (≠ H371), G351 (= G372), M352 (≠ L373), T353 (≠ N374)
5hxwA L-amino acid deaminase from proteus vulgaris (see paper)
38% identity, 13% coverage: 20:77/430 of query aligns to 1:63/433 of 5hxwA
- active site: F58 (≠ N72), Q61 (= Q75), A62 (≠ L76)
- binding flavin-adenine dinucleotide: V22 (≠ I36), G23 (= G37), G25 (= G39), I26 (≠ Y40), L27 (≠ S41), E46 (= E60), K47 (≠ A61), E53 (≠ G67), Q54 (≠ A68), S55 (= S69), R57 (= R71), F58 (≠ N72), Y59 (≠ G73), G60 (= G74), Q61 (= Q75)
Sites not aligning to the query:
- active site: 240, 284, 288
- binding cetyl-trimethyl-ammonium: 291, 294, 310, 311, 317, 318, 320, 373, 379, 399, 400
- binding flavin-adenine dinucleotide: 188, 189, 218, 219, 221, 240, 242, 331, 371, 373, 398, 399, 400, 401, 402, 403
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
19% identity, 84% coverage: 32:391/430 of query aligns to 3:348/363 of 7cyxA
- binding flavin-adenine dinucleotide: I7 (= I36), G8 (= G37), G10 (= G39), V11 (≠ Y40), I12 (≠ S41), V30 (≠ L59), E31 (= E60), K32 (≠ A61), E38 (≠ G67), A39 (= A68), S40 (= S69), A43 (≠ N72), G45 (= G74), L46 (≠ Q75), V171 (= V211), G200 (≠ C238), G201 (≠ N239), W203 (≠ Y241), G298 (= G341), R300 (≠ I343), P301 (≠ G344), Y326 (≠ S369), R327 (≠ G370), N328 (≠ H371), G329 (= G372), I330 (≠ L373)
Query Sequence
>PP_5273 FitnessBrowser__Putida:PP_5273
MIHSAQHAASYYAASSAPHPDHAYLQGEHNADVCIIGGGYSGLNTAIELAERGFSVILLE
ARKLGWGASGRNGGQLIRGVGHGLEQFLPVIGEEGVRTMKLMGLEAVQIVRERVEKHAIA
CDLAWGYCDLANKPAELLGFAQDAEELRGLGYAHELRLVGKDDIHSVVGADCYVGGLVDM
GSGHLHPLNLALGEAAAAARLGVKLFEQSEVTRIDYGTEVQVHTAQGRVRAKTLVLCCNA
YHNDLNRELGGKVLPAGSYIIATEPLGEERARTLLPQNMAVCDQRVALDYYRLSADHRLL
FGGACHYSGRDPKDIAAYMRPKMLKVFPQLADVRIDYQWGGMIGIGANRLPQVGRLASQP
NVYYAQAYSGHGLNATHLAARLLGEAISGQESGRFDLFNKVPHITFPGGKHLRSPLLALG
MLWHRLKELT
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory