SitesBLAST
Comparing PP_5275 FitnessBrowser__Putida:PP_5275 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3wx9A Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with pmp, gla, 4ad, 2og, glu and kya
29% identity, 75% coverage: 113:484/496 of query aligns to 21:397/404 of 3wx9A
- binding 4-(2-aminophenyl)-2,4-dioxobutanoic acid: R23 (≠ L115), G40 (= G132), L41 (≠ M133)
- binding 2-oxoglutaric acid: D213 (= D301), P214 (≠ V302), Y215 (= Y303), G216 (= G304), E217 (≠ D305), G241 (≠ S329), T242 (≠ S330), I246 (≠ T334)
- binding (2E)-pent-2-enedioic acid: G40 (= G132), Y130 (≠ F222), N184 (= N272), R376 (= R463)
- binding glutamic acid: V22 (= V114), L131 (≠ H223), V360 (≠ A447), A364 (≠ I451), R369 (≠ G456)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G104 (= G196), S105 (≠ C197), Q106 (≠ H198), Y130 (≠ F222), N184 (= N272), D212 (= D300), P214 (≠ V302), Y215 (= Y303), T242 (≠ S330), S244 (= S332), K245 (= K333), R252 (= R340)
Sites not aligning to the query:
3av7A Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with pmp, kyn as substrates and kya as products
29% identity, 75% coverage: 113:484/496 of query aligns to 21:397/404 of 3av7A
- binding 4-hydroxyquinoline-2-carboxylic acid: V22 (= V114), R23 (≠ L115), L131 (≠ H223), Q135 (= Q227), A364 (≠ I451), R369 (≠ G456)
- binding (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid: R23 (≠ L115), G40 (= G132), Y130 (≠ F222), L131 (≠ H223), A132 (≠ G224), N184 (= N272), R376 (= R463)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G104 (= G196), S105 (≠ C197), Q106 (≠ H198), Y130 (≠ F222), V179 (≠ T267), N184 (= N272), D212 (= D300), P214 (≠ V302), Y215 (= Y303), T242 (≠ S330), S244 (= S332), K245 (= K333), R252 (= R340)
Sites not aligning to the query:
3aowC Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with akg
29% identity, 75% coverage: 113:484/496 of query aligns to 21:397/404 of 3aowC
- binding 2-oxoglutaric acid: R23 (≠ L115), Y70 (= Y162), Y130 (≠ F222), L275 (vs. gap)
- binding pyridoxal-5'-phosphate: G104 (= G196), S105 (≠ C197), Q106 (≠ H198), Y130 (≠ F222), V179 (≠ T267), N184 (= N272), D212 (= D300), P214 (≠ V302), Y215 (= Y303), T242 (≠ S330), S244 (= S332), K245 (= K333), R252 (= R340)
3aovA Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with plp
29% identity, 75% coverage: 113:484/496 of query aligns to 21:397/404 of 3aovA
- binding pyridoxal-5'-phosphate: G104 (= G196), S105 (≠ C197), Q106 (≠ H198), Y130 (≠ F222), V179 (≠ T267), N184 (= N272), D212 (= D300), P214 (≠ V302), Y215 (= Y303), T242 (≠ S330), S244 (= S332), K245 (= K333), R252 (= R340)
1wstA Crystal structure of multiple substrate aminotransferase (msat) from thermococcus profundus
29% identity, 75% coverage: 113:484/496 of query aligns to 18:395/403 of 1wstA
- binding pyridoxal-5'-phosphate: G102 (= G196), S103 (≠ C197), Q104 (≠ H198), Y128 (≠ F222), V177 (≠ T267), N182 (= N272), D210 (= D300), P212 (≠ V302), Y213 (= Y303), T240 (≠ S330), S242 (= S332), K243 (= K333), R250 (= R340)
2zc0A Crystal structure of an archaeal alanine:glyoxylate aminotransferase (see paper)
28% identity, 72% coverage: 126:483/496 of query aligns to 36:399/405 of 2zc0A
- active site: Y132 (≠ F222), D214 (= D300), A216 (≠ V302), S246 (= S332)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G106 (= G196), G107 (≠ C197), T108 (≠ H198), Y132 (≠ F222), N186 (= N272), D214 (= D300), A216 (≠ V302), Y217 (= Y303), T244 (≠ S330), S246 (= S332), K247 (= K333), R254 (= R340)
2zyjA Crystal structure of lysn, alpha-aminoadipate aminotransferase (complexed with n-(5'-phosphopyridoxyl)-l-glutamate), from thermus thermophilus hb27 (see paper)
29% identity, 77% coverage: 110:489/496 of query aligns to 18:394/397 of 2zyjA
- binding N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid: I22 (≠ V114), R23 (≠ L115), G39 (≠ R131), G40 (= G132), G99 (= G196), S100 (≠ C197), Q101 (≠ H198), Y125 (≠ F222), N174 (= N272), D202 (= D300), Y205 (= Y303), S235 (= S330), S237 (= S332), K238 (= K333), R245 (= R340), R368 (= R463)
Q72LL6 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
29% identity, 77% coverage: 110:489/496 of query aligns to 18:394/397 of Q72LL6
- S20 (≠ E112) mutation to E: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate. Increases the affinity for leucine and 2-oxoisocaproate.
- R23 (≠ L115) mutation to A: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate which has the same chain length as Glu, but differs by the presence of a 2-oxo group which is not recognized by R-23. Increases the affinity for leucine and 2-oxoisocaproate due to the absence of gamma-carboxyl group.; mutation to Q: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate which has the same chain length as Glu, but differs by the presence of a 2-oxo group which is not recognized by R-23. Increases the affinity for leucine and 2-oxoisocaproate due to the absence of gamma-carboxyl group.
- G40 (= G132) binding
- Y70 (= Y162) binding
- N174 (= N272) binding ; binding
- R245 (= R340) binding
- R368 (= R463) binding
3cbfA Crystal structure of lysn, alpha-aminoadipate aminotransferase, from thermus thermophilus hb27 (see paper)
29% identity, 77% coverage: 110:489/496 of query aligns to 14:390/392 of 3cbfA
- binding (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid: I18 (≠ V114), R19 (≠ L115), G35 (≠ R131), G36 (= G132), G95 (= G196), S96 (≠ C197), Q97 (≠ H198), Y121 (≠ F222), N170 (= N272), D198 (= D300), Y201 (= Y303), S231 (= S330), S233 (= S332), K234 (= K333), R241 (= R340), R364 (= R463)
2egyA Crystal structure of lysn, alpha-aminoadipate aminotransferase (substrate free form), from thermus thermophilus hb27
29% identity, 77% coverage: 110:489/496 of query aligns to 14:390/392 of 2egyA
- binding pyridoxal-5'-phosphate: G95 (= G196), S96 (≠ C197), Q97 (≠ H198), Y121 (≠ F222), N170 (= N272), D198 (= D300), A200 (≠ V302), Y201 (= Y303), S231 (= S330), S233 (= S332), K234 (= K333), R241 (= R340)
8tn3A Structure of s. Hygroscopicus aminotransferase mppq complexed with pyridoxamine 5'-phosphate (pmp) (see paper)
30% identity, 59% coverage: 188:481/496 of query aligns to 84:383/388 of 8tn3A
2z1yA Crystal structure of lysn, alpha-aminoadipate aminotransferase (complexed with n-(5'-phosphopyridoxyl)-l-leucine), from thermus thermophilus hb27
30% identity, 68% coverage: 153:489/496 of query aligns to 53:386/389 of 2z1yA
- binding leucine: Y117 (≠ F222), R360 (= R463)
- binding pyridoxal-5'-phosphate: G91 (= G196), S92 (≠ C197), Q93 (≠ H198), Y117 (≠ F222), N166 (= N272), D194 (= D300), Y197 (= Y303), S227 (= S330), S229 (= S332), K230 (= K333), R237 (= R340)
Sites not aligning to the query:
1vp4A Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 a resolution
25% identity, 75% coverage: 116:487/496 of query aligns to 30:412/420 of 1vp4A
- binding pyridoxal-5'-phosphate: G112 (= G196), S113 (≠ C197), Q114 (≠ H198), Y138 (≠ F222), N194 (= N272), D222 (= D300), P224 (≠ V302), Y225 (= Y303), T252 (≠ S330), S254 (= S332), K255 (= K333), R262 (= R340)
4ge4A Kynurenine aminotransferase ii inhibitors (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 101:413/422 of 4ge4A
- binding (5-hydroxy-4-{[(1-hydroxy-7-methoxy-2-oxo-1,2-dihydroquinolin-3-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: G110 (= G196), S111 (≠ C197), Q112 (≠ H198), Y136 (≠ F222), N196 (= N272), D224 (= D300), P226 (≠ V302), Y227 (= Y303), S254 (= S330), S256 (= S332), K257 (= K333), R264 (= R340), R393 (= R463)
Sites not aligning to the query:
4gebA Kynurenine aminotransferase ii inhibitors (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 107:419/428 of 4gebA
- binding (5-hydroxy-4-{[(7-hydroxy-6-oxo-2-phenyl-6,7-dihydro-2H-pyrazolo[3,4-b]pyridin-5-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: S117 (≠ C197), Q118 (≠ H198), Y142 (≠ F222), N202 (= N272), D230 (= D300), P232 (≠ V302), Y233 (= Y303), S260 (= S330), S262 (= S332), K263 (= K333), R270 (= R340), R399 (= R463)
Sites not aligning to the query:
4ge9A Kynurenine aminotransferase ii inhibitors (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 107:419/428 of 4ge9A
- binding (4-{[(6-benzyl-1-hydroxy-7-methoxy-2-oxo-1,2-dihydroquinolin-3-yl)amino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate: S117 (≠ C197), Q118 (≠ H198), Y142 (≠ F222), N202 (= N272), D230 (= D300), P232 (≠ V302), Y233 (= Y303), S260 (= S330), S262 (= S332), R270 (= R340), L293 (≠ G362), R399 (= R463)
Sites not aligning to the query:
4ge7A Kynurenine aminotransferase ii inhibitors (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 107:419/428 of 4ge7A
- binding (5-hydroxy-4-{[(1-hydroxy-2-oxo-6-phenoxy-1,2-dihydroquinolin-3-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: S117 (≠ C197), Q118 (≠ H198), Y142 (≠ F222), N202 (= N272), D230 (= D300), P232 (≠ V302), Y233 (= Y303), S260 (= S330), S262 (= S332), R270 (= R340), L293 (≠ G362), R399 (= R463)
Sites not aligning to the query:
4gdyB Kynurenine aminotransferase ii inhibitors
28% identity, 60% coverage: 187:483/496 of query aligns to 107:419/428 of 4gdyB
- binding (5-hydroxy-6-methyl-4-{[(1-oxo-7-phenoxy-1,2-dihydro[1,2,4]triazolo[4,3-a]quinolin-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate: G116 (= G196), S117 (≠ C197), Q118 (≠ H198), Y142 (≠ F222), N202 (= N272), D230 (= D300), P232 (≠ V302), S260 (= S330), S262 (= S332), R270 (= R340), R399 (= R463)
Sites not aligning to the query:
2xh1A Crystal structure of human kat ii-inhibitor complex (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 94:406/412 of 2xh1A
- binding (3s)-10-(4-aminopiperazin-1-yl)-9-fluoro-7-hydroxy-3-methyl-2,3-dihydro-8h-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylate: L280 (≠ G362)
- binding pyridoxal-5'-phosphate: S104 (≠ C197), Q105 (≠ H198), Y129 (≠ F222), D217 (= D300), P219 (≠ V302), S247 (= S330), S249 (= S332), R257 (= R340)
Sites not aligning to the query:
3ue8A Kynurenine aminotransferase ii inhibitors (see paper)
28% identity, 60% coverage: 187:483/496 of query aligns to 90:402/410 of 3ue8A
- binding (5-hydroxy-4-{[(1-hydroxy-2-oxo-1,2-dihydroquinolin-3-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: S100 (≠ C197), Q101 (≠ H198), Y125 (≠ F222), N185 (= N272), D213 (= D300), P215 (≠ V302), Y216 (= Y303), S243 (= S330), S245 (= S332), K246 (= K333), R253 (= R340), R382 (= R463)
Sites not aligning to the query:
Query Sequence
>PP_5275 FitnessBrowser__Putida:PP_5275
MLYFQPNCTGRYANAAQEYAVTLYLNLAEILGARIKQGLYRPGQRLPSVRALSEEHGVSL
STVQQAYRMLEDSGMVSPRPKSGYFVSDQRQLPALPAVSRPAQRPVDISQWEQVLELVRS
TPRQDVVQLGRGMPDIDSPTLKPLLRSLAQLSRRQDMPGLYYDNIHGNLALREQVARLML
DSGCRLGPADLVITTGCHEALSCSIRAVCEPGDIVAVDSPSFHGAMQTLKGLGMKALEIP
TDPVTGISLEALELALEQWPIKLIQITPSCNNPLGYIMPEARKKALLSLAQRYDVAILED
DVYGDLAYTYPRPRTLKSFDDDGRVLLCSSFSKTLAPGLRIGWVAPGRYLERVLHMKYIS
TGSTASQPQLAIADFIAAGHYQPHVRRMRSQYQRGRDLMGDWVTRYFPAGTRVSRPQGGF
MLWVELPEHLDTLRLNRALLEQGVQVAVGSIFSASGKFRHCLRMNFAARPTPQIEASVRK
VGETALRLLDDESADA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory