Comparing Pf1N1B4_1110 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1110 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5hwnB Crystal structure of keto-deoxy-d-galactarate dehydratase complexed with pyruvate (see paper)
54% identity, 98% coverage: 1:297/303 of query aligns to 1:296/310 of 5hwnB
4ur8A Crystal structure of keto-deoxy-d-galactarate dehydratase complexed with 2-oxoadipic acid (see paper)
54% identity, 98% coverage: 1:297/303 of query aligns to 1:296/304 of 4ur8A
7mjfA Crystal structure of candidatus liberibacter solanacearum dihydrodipicolinate synthase with pyruvate and succinic semi-aldehyde bound in active site
28% identity, 75% coverage: 19:246/303 of query aligns to 10:238/296 of 7mjfA
Sites not aligning to the query:
7lvlA Dihydrodipicolinate synthase bound with allosteric inhibitor (s)- lysine from candidatus liberibacter solanacearum
28% identity, 75% coverage: 19:246/303 of query aligns to 10:238/296 of 7lvlA
Q8UGL3 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see paper)
29% identity, 72% coverage: 19:236/303 of query aligns to 10:228/294 of Q8UGL3
Q07607 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
29% identity, 83% coverage: 37:286/303 of query aligns to 27:274/292 of Q07607
4i7wA Agrobacterium tumefaciens dhdps with lysine and pyruvate
28% identity, 72% coverage: 19:236/303 of query aligns to 10:228/294 of 4i7wA
4dxvA Crystal structure of dihydrodipicolinate synthase from acinetobacter baumannii complexed with mg and cl ions at 1.80 a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 4dxvA
Sites not aligning to the query:
3u8gA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with oxalic acid at 1.80 a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 3u8gA
Sites not aligning to the query:
3tdfA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with 2-ketobutanoic acid at 1.99 a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 3tdfA
Sites not aligning to the query:
3tceA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with 5-hydroxylysine at 2.6 a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 3tceA
Sites not aligning to the query:
3rk8A Crystal structure of the chloride inhibited dihydrodipicolinate synthase from acinetobacter baumannii complexed with pyruvate at 1.8 a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 3rk8A
Sites not aligning to the query:
3pueB Crystal structure of the complex of dhydrodipicolinate synthase from acinetobacter baumannii with lysine at 2.6a resolution
35% identity, 46% coverage: 35:173/303 of query aligns to 26:167/291 of 3pueB
Sites not aligning to the query:
3na8A Crystal structure of a putative dihydrodipicolinate synthetase from pseudomonas aeruginosa
27% identity, 95% coverage: 13:299/303 of query aligns to 5:289/291 of 3na8A
4pfmA Shewanella benthica dhdps with lysine and pyruvate
27% identity, 91% coverage: 19:293/303 of query aligns to 11:283/295 of 4pfmA
5ud6C Crystal structure of dhdps from cyanidioschyzon merolae with lysine bound
29% identity, 85% coverage: 40:297/303 of query aligns to 34:293/299 of 5ud6C
3di1B Crystal structure of the staphylococcus aureus dihydrodipicolinate synthase-pyruvate complex (see paper)
27% identity, 87% coverage: 36:298/303 of query aligns to 29:287/291 of 3di1B
Sites not aligning to the query:
Q5HG25 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus (strain COL) (see paper)
27% identity, 87% coverage: 36:298/303 of query aligns to 29:287/295 of Q5HG25
2atsA Dihydrodipicolinate synthase co-crystallised with (s)-lysine
27% identity, 93% coverage: 19:301/303 of query aligns to 10:290/292 of 2atsA
P0A6L2 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli (strain K12) (see 7 papers)
27% identity, 93% coverage: 19:301/303 of query aligns to 10:290/292 of P0A6L2
>Pf1N1B4_1110 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1110
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL
AASEYSEIIKTAVDTCATSVPILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQ
DGVAAHVEAVCKSVKIGVVVYNRNVCRLTAPLLERLAERCPNLIGYKDGLGDIELMVSIR
RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVGK
IIDDFFLPYLDIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTGEEYEMLAALIDKQ
GAQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory