Comparing Pf1N1B4_1127 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1127 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
47% identity, 81% coverage: 2:266/326 of query aligns to 346:609/611 of 8j5qD
Sites not aligning to the query:
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
47% identity, 81% coverage: 2:264/326 of query aligns to 346:607/608 of 8j5tD
Sites not aligning to the query:
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
47% identity, 81% coverage: 2:264/326 of query aligns to 346:607/608 of 8j5sD
Sites not aligning to the query:
8xfcD Cryo-em structure of the atp-bound mtb dppabcd with the d445a mutation of dppa
45% identity, 78% coverage: 4:258/326 of query aligns to 259:514/517 of 8xfcD
Sites not aligning to the query:
8wdbD Cryo-em structure of the atp-bound dppabcd complex
45% identity, 78% coverage: 4:258/326 of query aligns to 258:513/513 of 8wdbD
Sites not aligning to the query:
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
36% identity, 98% coverage: 1:320/326 of query aligns to 1:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 98% coverage: 2:320/326 of query aligns to 1:310/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
31% identity, 96% coverage: 4:317/326 of query aligns to 3:323/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 76% coverage: 16:263/326 of query aligns to 7:248/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 76% coverage: 16:263/326 of query aligns to 8:249/344 of 6cvlD
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
33% identity, 78% coverage: 4:256/326 of query aligns to 3:246/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
33% identity, 78% coverage: 4:256/326 of query aligns to 3:246/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
33% identity, 78% coverage: 4:256/326 of query aligns to 3:246/250 of 7z16I
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 72% coverage: 20:255/326 of query aligns to 7:237/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 73% coverage: 18:254/326 of query aligns to 6:236/241 of 4u00A