Comparing Pf1N1B4_1132 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1132 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
6v1rA Crystal structure of iachsnfr fluorescent acetylcholine sensor precursor binding protein
35% identity, 90% coverage: 26:293/297 of query aligns to 5:271/278 of 6v1rA
7s7xA Crystal structure of icytsnfr cytisine sensor precursor binding protein with varenicline bound
35% identity, 90% coverage: 26:293/297 of query aligns to 5:271/278 of 7s7xA
3pprA Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of bacillus subtilis abc transporter opuc (see paper)
32% identity, 91% coverage: 26:294/297 of query aligns to 2:267/271 of 3pprA
3ppqA Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of bacillus subtilis abc transporter opuc (see paper)
32% identity, 91% coverage: 26:294/297 of query aligns to 2:267/271 of 3ppqA
3ppoA Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of bacillus subtilis abc transporter opuc (see paper)
32% identity, 91% coverage: 26:294/297 of query aligns to 3:268/272 of 3ppoA
7s7tA Inicsnfr3a nicotine sensor comprising periplasmic binding sequence plus fluorescent sequence with varenicline bound (see paper)
39% identity, 67% coverage: 96:293/297 of query aligns to 314:504/509 of 7s7tA
Sites not aligning to the query:
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
31% identity, 98% coverage: 4:294/297 of query aligns to 216:501/506 of A0A0H2ZQB9
7txlA Crystal structure of egtu solute binding domain from streptococcus pneumoniae d39 in complex with l-ergothioneine (see paper)
31% identity, 92% coverage: 22:294/297 of query aligns to 2:270/275 of 7txlA
6eylA Crystal structure of opubc in complex with carnitine
31% identity, 94% coverage: 16:294/297 of query aligns to 1:275/280 of 6eylA
6eyhA Structure of a opubc mutant with bound glycine betaine
31% identity, 94% coverage: 16:294/297 of query aligns to 1:275/280 of 6eyhA
1sw1A Crystal structure of prox from archeoglobus fulgidus in complex with proline betaine (see paper)
34% identity, 91% coverage: 26:294/297 of query aligns to 3:266/270 of 1sw1A
3r6uA Crystal structure of choline binding protein opubc from bacillus subtilis (see paper)
31% identity, 91% coverage: 25:294/297 of query aligns to 2:268/272 of 3r6uA
5nxyA Crystal structure of opuac from b. Subtilis in complex with arsenobetaine (see paper)
31% identity, 91% coverage: 25:294/297 of query aligns to 2:268/272 of 5nxyA
B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
31% identity, 92% coverage: 22:293/297 of query aligns to 287:550/553 of B5Z7I3
8dp7A Structure of helicobacter pylori egtu bound to egt (see paper)
31% identity, 88% coverage: 34:293/297 of query aligns to 10:262/265 of 8dp7A
Sites not aligning to the query:
>Pf1N1B4_1132 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1132
MKKVSLILGCALLFAGFAQAAEKPVIRIGARVFTEQTLLAEITSQYLRAKGYDTQVTGGL
GSNLARSAHESGQLDLMWEYTGVSLVAYNHVTDKLDSAHSYARVKELDAKKGLVWLTPSK
FSNTYALALPENTAKAYPQINTISELNTVLQAEAKTHHLVALDTEFANRSDGLDGLVDLY
GMNLTRKNIRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLEDDKHYFPDYTAAP
VVRQVYLDAHPKLAEELKPLAELFDDATMRQLNARVDVDHESPSSVAADFLRQHPIH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory