SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing Pf1N1B4_128 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_128 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

A0QV10 Aldo-keto reductase MSMEG_2408/MSMEI_2347; EC 1.1.1.- from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
39% identity, 96% coverage: 2:256/267 of query aligns to 12:264/275 of A0QV10

query
sites
A0QV10

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K262 (≠ Q254) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)

2vdgA Barley aldose reductase 1 complex with butanol (see paper)
36% identity, 96% coverage: 2:256/267 of query aligns to 11:282/308 of 2vdgA

query
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2vdgA

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active site: D43 (= D34), Y48 (= Y39), K76 (= K64), H109 (= H97)
binding 1-butanol: E47 (≠ I38), E123 (≠ D103), A124 (≠ Q104)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G18 (= G9), T19 (= T10), W20 (≠ F11), D43 (= D34), Y48 (= Y39), K76 (= K64), H109 (= H97), C154 (≠ S129), N155 (= N130), Q176 (= Q152), Y202 (= Y178), S203 (≠ M179), P204 (≠ T180), L205 (= L181), S207 (≠ Y183), S208 (≠ G184), N211 (vs. gap), I245 (= I219), P246 (= P220), K247 (≠ S221), S248 (= S222), S249 (≠ T223), K250 (= K224), R253 (≠ N227), E256 (≠ G230), N257 (= N231)

Sites not aligning to the query:

2bgsA Holo aldose reductase from barley (see paper)
36% identity, 96% coverage: 2:256/267 of query aligns to 11:282/308 of 2bgsA

query
sites
2bgsA

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active site: D43 (= D34), Y48 (= Y39), K76 (= K64), H109 (= H97)
binding bicarbonate ion: W20 (≠ F11), Y48 (= Y39), H109 (= H97)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G18 (= G9), T19 (= T10), W20 (≠ F11), D43 (= D34), Y48 (= Y39), C154 (≠ S129), N155 (= N130), Q176 (= Q152), Y202 (= Y178), S203 (≠ M179), P204 (≠ T180), L205 (= L181), S207 (≠ Y183), I245 (= I219), P246 (= P220), K247 (≠ S221), S248 (= S222), K250 (= K224), R253 (≠ N227), E256 (≠ G230), N257 (= N231)

Sites not aligning to the query:

binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: 283

7s5fB Crystal structure of mannose-6-phosphate reductase from celery (apium graveolens) leaves with NADP+ and mannonic acid bound (see paper)
33% identity, 97% coverage: 1:259/267 of query aligns to 9:299/309 of 7s5fB

query
sites
7s5fB

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binding d-mannonic acid: W19 (≠ F11), D46 (≠ I38), Y47 (= Y39), W78 (= W66), H107 (= H97)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G17 (= G9), V18 (≠ T10), W19 (≠ F11), D42 (= D34), Y47 (= Y39), N161 (= N130), Q182 (= Q152), H208 (≠ Y178), T209 (≠ M179), P210 (≠ T180), L211 (= L181), G213 (vs. gap), A214 (vs. gap), A244 (= A204), I259 (= I219), K261 (≠ S221), S262 (= S222), S263 (≠ T223), R267 (≠ N227), E270 (≠ G230), N271 (= N231)

4fziA Crystal structure of prostaglandin f synthase from trypanosoma cruzi (see paper)
34% identity, 99% coverage: 1:264/267 of query aligns to 10:274/277 of 4fziA

query
sites
4fziA

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V

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R

T

W

G

A

L

I

E

E

L

A

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

Y

I

I

Y
|
Y

K

S

N

N

E

E

A

R

E

G

V

V

G

G

Q

Q

A

G

I

I

A

R

A

E

S

S

G

G

I

V

A

P

R

R

D

E

E

E

L

V

F

W

I

V

T

T

S

T

K
|
K

I

V

W

W

V

N

A

S

N

D

F

Q

A

G

K

Y

D

E

R

K

L

T

I

L

D

A

S

A

L

F

K

E

E

R

S

S

L

R

N

E

K

L

L

L

Q

G

T

L

D

E

Y

Y

L

I

D

D

L

L

T

Y

L

L

I

I

H
|
H

W

W

P

P

S

G

P

K

E

K

D

K

Q

F

V

V

P

D

V

T

E

W

E

K

F

A

M

L

G

E

A

K

L

L

L

Y

Q

E

A

E

K

K

Q

K

L

V

G

-

L

-

T

-

R

R

K

A

I

I

G

G

V

V

S

S

N

N

F

F

T

E

V

P

D

H

L

H

M

L

Q

T

Q

E

A

L

I

F

T

K

A

S

I

C

G

K

A

I

E

R

N

P

I

M

A

-

T

V

N

N

Q

Q

I

V

E

E

L

L

H

H

P

P

Y

L

L

F

Q

Q

N

Q

R

R

K

T

V

L

V

R

E

E

F

F

A

C

Q

K

S

Q

Q

H

G

N

I

I

R

A

I

I

T

T

S

A

Y
x
W

M

S

T

P

L

L

A

G

Y

S

G

G

E

E

-

E

-

A

-

G

V

I

L

L

K

K

D

N

P

H

L

V

I

L

Q

G

Q

E

I

I

A

A

D

K

R

K

L

H

Q

N

A

K

T

S

P

P

A

A

Q

Q

V

V

T

V

L

I

A

R

W

W

A

D

M

I

Q

Q

L

H

G

G

Y

I

A

V

V

T

I

I

P

P

S

K

S

S

T

T

K

N

R

K

A

G

N

R

L

I

Q

Q

G

E

N

N

L

F

Q

N

A

V

C

W

A

D

L

F

T

K

L

L

S

T

D

E

A

E

D

E

M

M

A

R

L

Q

I

I

A

D

A

E

L

L

D

N

R

E

G

D

Q

K

R

R

L

I

-

G

T

A

S

D

P

P

K

D

G

N

I

F

A

F

P

P

active site: D44 (= D34), Y49 (= Y39), K74 (= K64), H107 (= H97)
binding glutamic acid: W20 (≠ F11), Y49 (= Y39), H107 (= H97), W184 (≠ Y178)

Q0PGJ6 NADPH-dependent aldo-keto reductase, chloroplastic; AtChlAKR; Aldo-keto reductase family 4 member C9; EC 1.1.1.- from Arabidopsis thaliana (Mouse-ear cress) (see paper)
33% identity, 96% coverage: 3:257/267 of query aligns to 16:292/315 of Q0PGJ6

query
sites
Q0PGJ6

I

F

P

P

A

S

F

V

G

G

L

L

G

G

T
|
T

F
x
W

R

Q

L

A

Q

S

G

P

Q

G

V

L

V

V

I

G

D

D

S

A

V

V

S

A

T

A

G

A

L

V

E

K

L

I

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

C

A

A

Q

Q

I

I

Y

Y

K

G

N

N

E

E

A

K

E

E

V

I

G

G

Q

A

A

V

I

L

A

K

-

L

-

F

-

E

-

D

S

R

G

V

I

V

A

K

R

R

D

E

E

D

L

L

F

F

I

I

T

T

S

S

K

K

I

L

W

W

V

C

A

T

N

D

F

H

A

D

K

P

D

Q

R

D

L

V

I

P

D

E

S

A

L

L

K

N

E

R

S

T

L

L

N

K

K

D

L

L

Q

Q

T

L

D

E

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

I

H

H

W

W

P

P

S

A

-

R

-

I

-

K

-

G

-

S

-

V

-

G

-

I

-

K

P

P

E

E

D

N

Q

L

V

L

P

P

V

V

E

D

-

I

-

P

-

S

-

T

-

W

E

K

F

A

M

M

G

E

A

A

L

L

L

Y

Q

D

A

S

K

-

Q

-

L

-

G

G

L

K

T

A

R

R

K

A

I

I

G

G

V

V

S
|
S

N
|
N

F

F

T

S

V

T

-

K

-

L

-

A

D

D

L

L

M

L

Q

E

Q

L

A

A

I

R

T

V

A

P

I

P

G

-

A

-

E

-

N

-

I

-

A

A

T

V

N

N

Q
|
Q

I

V

E

E

L

C

H

H

P

P

Y

S

L

W

Q

R

N

Q

R

T

K

K

V

L

V

Q

E

E

F

F

A

C

Q

K

S

S

Q

K

G

G

I

V

R

H

I

L

T

S

S

A

Y

Y

M
x
S

T
x
P

L
|
L

A
x
G

-
x
S

-
x
P

-
x
G

-

T

-

W

-

L

Y

K

G

S

E

D

V

V

L

L

K

K

D

N

P

P

L

I

I

L

Q

N

Q

M

I

V

A

A

D

E

R

K

L

L

Q

G

A

K

T

S

P

P

A

A

Q

Q

V

V

T

A

L

L

A

R

W

W

A

G

M

L

Q

Q

L

M

G

G

Y

H

A

S

V

V

I

L

P

P

S
x
K

S
|
S

T
|
T

K

N

R

E

A

G

N
x
R

L
x
I

Q
x
K

G
x
E

N
|
N

L

F

Q

N

A

V

C

F

A

D

L

W

T

S

L

I

S

P

D

D

A

Y

D

M

M

F

A

A

L

K

I

F

A

A

A

E

L

I

D

E

R

Q

G

A

Q

R

R

L

L

V

T

T

TW 23:24 (≠ TF 10:11) binding
D47 (= D34) binding
SN 158:159 (= SN 129:130) binding
Q180 (= Q152) binding
207:213 (vs. 179:182, 14% identical) binding
KST 256:258 (≠ SST 221:223) binding
RIKEN 262:266 (≠ NLQGN 227:231) binding

4gieA Crystal structure of prostaglandin f synthase from trypanosoma cruzi bound to NADP (see paper)
34% identity, 99% coverage: 1:264/267 of query aligns to 21:285/288 of 4gieA

query
sites
4gieA

M

V

S

R

I

M

P

P

A

Q

F

L

G

G

L

L

G
|
G

T

V

F
x
W

R

R

L

A

Q

Q

-

D

G

G

Q

A

V

E

V

T

I

A

D

N

S

A

V

V

S

R

T

W

G

A

L

I

E

E

L

A

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

Y

I

I

Y
|
Y

K

S

N

N

E

E

A

R

E

G

V

V

G

G

Q

Q

A

G

I

I

A

R

A

E

S

S

G

G

I

V

A

P

R

R

D

E

E

E

L

V

F

W

I

V

T

T

S

T

K
|
K

I

V

W

W

V

N

A

S

N

D

F

Q

A

G

K

Y

D

E

R

K

L

T

I

L

D

A

S

A

L

F

K

E

E

R

S

S

L

R

N

E

K

L

L

L

Q

G

T

L

D

E

Y

Y

L

I

D

D

L

L

T

Y

L

L

I

I

H
|
H

W
|
W

P

P

S

G

P

K

E

K

D

K

Q

F

V

V

P

D

V

T

E

W

E

K

F

A

M

L

G

E

A

K

L

L

L

Y

Q

E

A

E

K

K

Q

K

L

V

G

-

L

-

T

-

R

R

K

A

I

I

G

G

V

V

S

S

N
|
N

F

F

T

E

V

P

D

H

L

H

M

L

Q

T

Q

E

A

L

I

F

T

K

A

S

I

C

G

K

A

I

E

R

N

P

I

M

A

-

T

V

N

N

Q
|
Q

I

V

E

E

L

L

H

H

P

P

Y

L

L

F

Q

Q

N

Q

R

R

K

T

V

L

V

R

E

E

F

F

A

C

Q

K

S

Q

Q

H

G

N

I

I

R

A

I

I

T

T

S

A

Y
x
W

M
x
S

T
x
P

L
|
L

A

G

Y
x
S

G

G

E

E

-

E

-

A

-

G

V

I

L
|
L

K

K

D

N

P

H

L

V

I

L

Q

G

Q

E

I

I

A

A

D

K

R

K

L

H

Q

N

A

K

T

S

P

P

A
|
A

Q

Q

V

V

T

V

L

I

A

R

W

W

A

D

M

I

Q

Q

L

H

G

G

Y

I

A

V

V

T

I
|
I

P
|
P

S
x
K

S
|
S

T

T

K

N

R

K

A

G

N
x
R

L

I

Q

Q

G
x
E

N
|
N

L

F

Q

N

A

V

C

W

A

D

L

F

T

K

L

L

S

T

D

E

A

E

D

E

M

M

A

R

L

Q

I

I

A

D

A

E

L

L

D

N

R

E

G

D

Q

K

R

R

L

I

-

G

T

A

S

D

P

P

K

D

G

N

I

F

A

F

P

P

active site: D55 (= D34), Y60 (= Y39), K85 (= K64), H118 (= H97)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G29 (= G9), W31 (≠ F11), D55 (= D34), Y60 (= Y39), H118 (= H97), W119 (= W98), N148 (= N130), Q169 (= Q152), W195 (≠ Y178), S196 (≠ M179), P197 (≠ T180), L198 (= L181), S200 (≠ Y183), L207 (= L187), A224 (= A204), I239 (= I219), P240 (= P220), K241 (≠ S221), S242 (= S222), R247 (≠ N227), E250 (≠ G230), N251 (= N231)

3h7uA Crystal structure of the plant stress-response enzyme akr4c9 (see paper)
33% identity, 96% coverage: 3:257/267 of query aligns to 13:289/312 of 3h7uA

query
sites
3h7uA

I

F

P

P

A

S

F

V

G

G

L

L

G
|
G

T
|
T

F
x
W

R

Q

L

A

Q
x
S

G

P

Q

G

V

L

V

V

I

G

D

D

S

A

V

V

S

A

T

A

G

A

L

V

E

K

L

I

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

C

A

A

Q

Q

I

I

Y
|
Y

K

G

N

N

E

E

A

K

E

E

V

I

G

G

Q

A

A

V

I

L

A

K

-

L

-

F

-

E

-

D

S

R

G

V

I

V

A

K

R

R

D

E

E

D

L

L

F

F

I

I

T

T

S

S

K
|
K

I

L

W

W

V

C

A

T

N

D

F

H

A

D

K

P

D

Q

R

D

L

V

I

P

D

E

S

A

L

L

K

N

E

R

S

T

L

L

N

K

K

D

L

L

Q

Q

T

L

D

E

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

I

H
|
H

W
|
W

P

P

S

A

-

R

-

I

-

K

-

G

-

S

-

V

-

G

-

I

-

K

P

P

E

E

D

N

Q

L

V

L

P

P

V

V

E

D

-

I

-

P

-

S

-

T

-

W

E

K

F

A

M

M

G

E

A

A

L

L

L

Y

Q

D

A

S

K

-

Q

-

L

-

G

G

L

K

T

A

R

R

K

A

I

I

G

G

V

V

S

S

N
|
N

F

F

T

S

V

T

-

K

-

L

-

A

D

D

L

L

M

L

Q

E

Q

L

A

A

I

R

T

V

A

P

I

P

G

-

A

-

E

-

N

-

I

-

A

A

T

V

N

N

Q
|
Q

I

V

E

E

L

C

H

H

P

P

Y

S

L

W

Q

R

N

Q

R

T

K

K

V

L

V

Q

E

E

F

F

A

C

Q

K

S

S

Q

K

G

G

I

V

R

H

I

L

T

S

S

A

Y
|
Y

M
x
S

T
x
P

L
|
L

A

G

-
x
S

-
x
P

-
x
G

-

T

-

W

-

L

Y

K

G

S

E

D

V

V

L

L

K

K

D

N

P

P

L

I

I

L

Q

N

Q

M

I

V

A

A

D

E

R

K

L

L

Q

G

A

K

T

S

P

P

A
|
A

Q

Q

V

V

T

A

L

L

A

R

W

W

A

G

M

L

Q

Q

L

M

G

G

Y

H

A

S

V

V

I
x
L

P
|
P

S
x
K

S
|
S

T

T

K

N

R

E

A

G

N
x
R

L

I

Q

K

G
x
E

N
|
N

L

F

Q

N

A

V

C

F

A

D

L

W

T

S

L

I

S

P

D

D

A

Y

D

M

M

F

A

A

L

K

I

F

A

A

A

E

L

I

D

E

R

Q

G

A

Q

R

R

L

L

V

T

T

active site: S24 (≠ Q14), D44 (= D34), Y49 (= Y39), K78 (= K64), H111 (= H97)
binding acetate ion: W21 (≠ F11), Y49 (= Y39), H111 (= H97)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G19 (= G9), T20 (= T10), W21 (≠ F11), D44 (= D34), Y49 (= Y39), H111 (= H97), W112 (= W98), N156 (= N130), Q177 (= Q152), Y203 (= Y178), S204 (≠ M179), P205 (≠ T180), L206 (= L181), S208 (vs. gap), P209 (vs. gap), G210 (vs. gap), A236 (= A204), L251 (≠ I219), P252 (= P220), K253 (≠ S221), S254 (= S222), R259 (≠ N227), E262 (≠ G230), N263 (= N231)

5jh2A Crystal structure of the holo form of akr4c7 from maize (see paper)
38% identity, 90% coverage: 3:241/267 of query aligns to 12:245/257 of 5jh2A

query
sites
5jh2A

I

I

P

P

A

S

F

V

G

G

L

L

G

G

T

S

F

W

R

Q

L

S

Q

D

G

P

Q

G

V

V

I

G

D

N

S

A

V

V

S

Y

T

A

G

A

L

V

E

K

L

A

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

C

A

A

Q

R

I

V

Y
|
Y

K

G

N

N

E

E

A

K

E

E

V

I

G

G

Q

L

A

A

I

L

A

K

-

L

-

F

-

E

S

G

G

V

I

V

A

K

R

R

D

E

E

D

L

M

F

F

I

I

T

T

S

S

K
|
K

I

L

W

W

V

N

A

D

N

H

F

H

A

A

K

P

D

E

R

D

L

V

I

P

D

E

S

A

L

L

K

N

E

D

S

S

L

L

N

N

K

D

L

L

Q

Q

T

L

D

E

Y

Y

L

L

D

D

L

L

T

Y

L

L

I

I

H
|
H

W

W

P

P

S

F

P

-

E

-

D

-

Q

-

V

-

P

-

V

F

E

P

E

A

F

T

M

W

G

G

A

A

L

M

L

E

Q

K

A

L

K

Y

Q

D

L

A

G

G

L

K

T

A

R

R

K

A

I

I

G

G

V

V

S

S

N

N

F

F

T

S

V

S

D

K

L

K

M

L

Q

G

Q

D

A

-

I

L

T

L

A

A

I

V

G

A

A

R

E

V

N

P

I

P

A

A

T

V

N

D

Q

Q

I

V

E

E

L

C

H

H

P

P

Y

G

L

W

Q

Q

N

Q

R

T

K

K

V

L

V

H

E

S

F

F

A

C

Q

Q

S

S

Q

T

G

G

I

V

R

H

I

L

T

T

S

A

Y

Y

M
x
S

T
x
P

L
|
L

A

-

Y

-

G
|
G

E

N

V

V

L

L

K

K

D

E

P

P

L

I

I

I

Q

I

Q

S

I

I

A

A

D

E

R

K

L

L

Q

G

A

K

T

T

P

S

A
|
A

Q

Q

V

V

T

A

L

L

A

R

W

W

A

N

M

I

Q

Q

L

M

G

G

Y

H

A

S

V

V

I

L

P

P

S
x
K

S
|
S

T
|
T

K

N

R

E

A

E

N
x
R

L

I

Q

K

G

Q

N
|
N

L

L

Q

D

A

V

C

Y

A

D

L

W

T

S

L

I

S

P

D

D

active site: D43 (= D34), Y48 (= Y39), K77 (= K64), H110 (= H97)
binding adenosine-2'-5'-diphosphate: S185 (≠ M179), P186 (≠ T180), L187 (= L181), G188 (= G184), A208 (= A204), K225 (≠ S221), S226 (= S222), T227 (= T223), R231 (≠ N227), N235 (= N231)

3wbwA Crystal structure of gox0644 in complex with NADPH
37% identity, 94% coverage: 2:252/267 of query aligns to 13:257/271 of 3wbwA

query
sites
3wbwA

S

T

I

M

P

P

A

Q

F

I

G

G

L

L

G
|
G

T

V

F

W

R

E

L

T

Q

P

G

P

Q

D

V

E

V

T

I

A

D

E

S

V

V

V

S

K

T

E

G

A

L

V

E

K

L

L

G

G

Y

Y

R

R

V

S

I

V

D
|
D

T

T

A

A

Q

R

I

L

Y
|
Y

K

K

N

N

E

E

A

E

E

G

V

V

G

G

Q

K

A

G

I

L

A

E

A

D

S

H

G

-

I

-

A

-

R

-

D

P

E

E

L

I

F

F

I

L

T

T

S

T

K
|
K

I

L

W

W

V

N

A

D

N

E

F

Q

A

G

K

Y

D

D

R

S

L

T

I

L

D

R

S

A

L

Y

K

E

E

E

S

S

L

A

N

R

K

L

L

L

Q

R

T

R

D

P

Y

V

L

L

D

D

L

L

T

Y

L

L

I

I

H
|
H

W

W

P

P

S

M

P

P

E

A

D

Q

Q

G

V

Q

P

Y

V

V

E

E

E

T

F

W

M

K

G

-

A

A

L

L

L

V

Q

E

A

L

K

K

Q

K

L

S

G

G

L

R

T

V

R

K

K

S

I

I

G

G

V

V

S

S

N
|
N

F

F

T

E

V

S

D

E

L

H

M

L

Q

E

Q

R

A

I

I

M

T

D

A

A

I

T

G

G

A

V

E

V

N

P

I

V

A

-

T

V

N

N

Q

Q

I

I

E

E

L

L

H

H

P

P

Y

D

L

F

Q

Q

N

Q

R

R

K

A

V

L

V

R

E

E

F

F

A

H

Q

E

S

K

Q

H

G

N

I

I

R

R

I

T

T

E

S

S

Y
x
W

M
x
R

T
x
P

L
|
L

A

G

Y

K

G

G

E

R

V

V

L
|
L

K

S

D

D

P

E

L

R

I

I

Q

G

Q

K

I

I

A

A

D

E

R

K

L

H

Q

S

A

R

T

T

P

P

A
|
A

Q

Q

V

V

T

V

L

I

A

R

W

W

A

H

M

L

Q

Q

L

N

G

G

Y

L

A

I

V

V

I

I

P

P

S
x
K

S
|
S

T
x
V

K

N

R

P

A

K

N
x
R

L

L

Q

A

G
x
E

N
|
N

L

L

Q

D

A

V

C

F

A

G

L

F

T

V

L

L

S

D

D

A

A

D

D

D

M

M

A

Q

L

A

I

I

A

E

A

Q

L

M

D

D

R

R

active site: D45 (= D34), Y50 (= Y39), K71 (= K64), H104 (= H97)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G20 (= G9), H104 (= H97), N136 (= N130), W183 (≠ Y178), R184 (≠ M179), P185 (≠ T180), L186 (= L181), L192 (= L187), A209 (= A204), K226 (≠ S221), S227 (= S222), V228 (≠ T223), R232 (≠ N227), E235 (≠ G230), N236 (= N231)

P06632 2,5-diketo-D-gluconic acid reductase A; 2,5-DKG reductase A; 2,5-DKGR A; 25DKGR-A; AKR5C; EC 1.1.1.346 from Corynebacterium sp. (strain ATCC 31090) (see 3 papers)
41% identity, 94% coverage: 2:253/267 of query aligns to 13:264/278 of P06632

query
sites
P06632

S

S

I

I

P

P

A

Q

F

L

G

G

L

Y

G

G

T

V

F

F

R

K

L

V

Q

P

G

P

Q

A

V

D

V

T

I

Q

D

R

S

A

V

V

S

E

T

E

G

A

L

L

E

E

L

V

G

G

Y

Y

R

R

V

H

I

I

D

D

T

T

A

A

Q

A

I

I

Y
|
Y

K

G

N

N

E

E

A

E

E

G

V

V

G

G

Q

A

A

A

I

I

A

A

S

S

G

G

I

I

A

A

R

R

D

D

E

D

L

L

F

F

I

I

T

T

S

T

K

K

I

L

W

W

V

N

A

D

N

R

F

H

A

D

K

G

D

D

R

E

L

P

I

A

D

A

S

A

L

I

K

A

E

E

S

S

L

L

N

A

K

K

L

L

Q

A

T

L

D

D

Y

Q

L

V

D

D

L

L

T

Y

L

L

I

V

H
|
H

W

W

P

P

S

T

P

P

E

A

D

A

Q

D

V

N

P

Y

V

V

E

H

E

A

F

W

M

E

G

-

A

K

L

M

L

I

Q

E

A

L

K

R

Q

A

L

A

G

G

L

L

T

T

R

R

K

S

I

I

G

G

V

V

S

S

N

N

F

H

T

L

V

V

D

P

L

H

M

L

Q

E

Q

R

A

I

I

V

T

A

A

A

I

T

G

G

A

V

E

V

N

P

I

-

A

A

T

V

N

N

Q

Q

I

I

E

E

L

L

H

H

P

P

Y

A

L

Y

Q

Q

N

Q

R

R

K

E

V

I

V

T

E

D

F

W

A

A

Q

A

S

A

Q

H

G

D

I

V

R

K

I

I

T

E

S

S

Y

W

M
x
G

T
x
P

L
|
L

A
x
G

Y
x
Q

G
|
G

-
x
K

-
x
Y

E
x
D

V
x
L

L
x
F

K
x
G

D
x
A

P
x
E

L
x
P

I
x
V

Q
x
T

Q
x
A

I
x
A

A
|
A

D
x
A

R
x
A

L
x
H

Q
x
G

A
x
K

T
|
T

P
|
P

A
|
A

Q
|
Q

V
x
A

T
x
V

L
|
L

A
x
R

W
|
W

A
x
H

M
x
L

Q
|
Q

L
x
K

G
|
G

Y
x
F

A
x
V

V
|
V

I
x
F

P
|
P

S
x
K

S
|
S

T
x
V

K
x
R

R
|
R

A
x
E

N
x
R

L
|
L

Q
x
E

G
x
E

N
|
N

L

L

Q

D

A

V

C

F

A

D

L

F

T

D

L

L

S

T

D

D

A

T

D

E

M

I

A

A

L

A

I

I

A

D

A

A

L

M

D

D

R

P

G

G

Y50 (= Y39) active site, Proton donor
H108 (= H97) binding
188:242 (vs. 179:231, 31% identical) binding

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

1a80A Native 2,5-diketo-d-gluconic acid reductase a from corynbacterium sp. Complexed with NADPH (see paper)
41% identity, 94% coverage: 2:253/267 of query aligns to 12:263/277 of 1a80A

query
sites
1a80A

S

S

I

I

P

P

A

Q

F

L

G

G

L

Y

G
|
G

T

V

F
|
F

R

K

L

V

Q

P

G

P

Q

A

V

D

V

T

I

Q

D

R

S

A

V

V

S

E

T

E

G

A

L

L

E

E

L

V

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

A

I

I

Y
|
Y

K

G

N

N

E

E

A

E

E

G

V

V

G

G

Q

A

A

A

I

I

A

A

S

S

G

G

I

I

A

A

R

R

D

D

E

D

L

L

F

F

I

I

T

T

S

T

K
|
K

I

L

W

W

V

N

A

D

N

R

F

H

A

D

K

G

D

D

R

E

L

P

I

A

D

A

S

A

L

I

K

A

E

E

S

S

L

L

N

A

K

K

L

L

Q

A

T

L

D

D

Y

Q

L

V

D

D

L

L

T

Y

L

L

I

V

H
|
H

W

W

P

P

S

T

P

P

E

A

D

A

Q

D

V

N

P

Y

V

V

E

H

E

A

F

W

M

E

G

-

A

K

L

M

L

I

Q

E

A

L

K

R

Q

A

L

A

G

G

L

L

T

T

R

R

K

S

I

I

G

G

V

V

S
|
S

N

N

F

H

T

L

V

V

D

P

L

H

M

L

Q

E

Q

R

A

I

I

V

T

A

A

A

I

T

G

G

A

V

E

V

N

P

I

-

A

A

T

V

N

N

Q
|
Q

I

I

E

E

L

L

H

H

P

P

Y

A

L

Y

Q

Q

N

Q

R

R

K

E

V

I

V

T

E

D

F

W

A

A

Q

A

S

A

Q

H

G

D

I

V

R

K

I

I

T

E

S

S

Y
x
W

M
x
G

T
x
P

L
|
L

A

G

Y
x
Q

G

G

-

K

-

Y

E

D

V

L

L

F

K

G

D

A

P

E

L

P

I

V

Q

T

Q

A

I

A

A

A

D

A

R

A

L

H

Q

G

A

K

T

T

P

P

A
|
A

Q

Q

V

A

T

V

L

L

A

R

W

W

A

H

M

L

Q

Q

L

K

G

G

Y

F

A

V

V

V

I
x
F

P

P

S
x
K

S
|
S

T
x
V

K
x
R

R

R

A

E

N
x
R

L

L

Q

E

G
x
E

N
|
N

L

L

Q

D

A

V

C

F

A

D

L

F

T

D

L

L

S

T

D

D

A

T

D

E

M

I

A

A

L

A

I

I

A

D

A

A

L

M

D

D

R

P

G

G

active site: D44 (= D34), Y49 (= Y39), K74 (= K64), H107 (= H97)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G19 (= G9), F21 (= F11), D44 (= D34), Y49 (= Y39), H107 (= H97), S138 (= S129), Q160 (= Q152), W186 (≠ Y178), G187 (≠ M179), P188 (≠ T180), L189 (= L181), Q191 (≠ Y183), A214 (= A204), F229 (≠ I219), K231 (≠ S221), S232 (= S222), V233 (≠ T223), R234 (≠ K224), R237 (≠ N227), E240 (≠ G230), N241 (= N231)

A0QV09 Aldo-keto reductase MSMEG_2407/MSMEI_2346; AKR; AKR5H1; EC 1.1.1.- from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
38% identity, 96% coverage: 2:256/267 of query aligns to 21:273/283 of A0QV09

query
sites
A0QV09

S

T

I

L

P

P

A

V

F

V

G

G

L

I

G

G

T

V

F

G

R

E

L

L

Q

S

G

D

Q

S

V

E

V

A

I

E

D

R

S

S

V

V

S

S

T

A

G

A

L

L

E

E

L

A

G

G

Y

Y

R

R

V

L

I

I

D

D

T

T

A

A

Q

A

I

A

Y

Y

K

G

N

N

E

E

A

A

E

A

V

V

G

G

Q

R

A

A

I

I

A

A

S

S

G

G

I

I

A

P

R

R

D

D

E

E

L

I

F

Y

I

V

T

T

S

T

K

K

I

L

W

A

V

T

A

P

N

D

F

Q

A

G

K

F

D

T

R

S

L

S

I

Q

D

A

S

A

L

A

K

R

E

A

S

S

L

L

N

E

K

R

L

L

Q

G

T

L

D

D

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

I

H

H

W

W

P

P

S

G

P

G

E

D

D

T

Q

S

V

K

P

Y

V

V

E

D

E

S

F

W

M

-

G

G

A

G

L

L

L

M

Q

K

A

V

K

K

Q

E

L

D

G

G

L

I

T

A

R

R

K

S

I

I

G

G

V

V

S

C

N

N

F

F

T

G

V

A

D

E

L

D

M

L

Q

E

Q

T

A

-

I

I

T

V

A

S

I

L

G

T

A

Y

E

F

N

T

I

P

A

A

T

V

N

N

Q

Q

I

I

E

E

L

L

H

H

P

P

Y

L

L

L

Q

N

N

Q

R

A

K

A

V

L

V

R

E

E

F

V

A

N

Q

A

S

G

Q

Y

G

N

I

I

R

V

I

T

T

E

S

A

Y

Y

M
x
G

T

P

L
|
L

A

G

Y
x
V

G

G

E

R

V

L

L

L

K

D

D

H

P

P

L

A

I

V

Q

T

Q

A

I

I

A

A

D

E

R

A

L

H

Q

G

A

R

T

T

P

A

A

A

Q

Q

V

V

T

L

L

L

A

R

W

W

A

S

M

I

Q

Q

L

L

G

G

Y

N

A

V

V

V

I
|
I

P

S

S
x
R

S
|
S

T
x
A

K

N

R

P

A

E

N
x
R

L

I

Q

A

G
x
S

N
|
N

L

L

Q

D

A

V

C

F

A

G

L

F

T

E

L

L

S

T

D

A

A

D

D

E

M

M

A

E

L

T

I

L

A

N

A

G

L

L

D

D

R

D

G

G

Q

T

R

R

L

F

G196 (≠ M179) binding
L198 (= L181) binding
V200 (≠ Y183) binding
I236 (= I219) binding
R238 (≠ S221) binding
S239 (= S222) binding
A240 (≠ T223) binding
R244 (≠ N227) binding
S247 (≠ G230) binding
N248 (= N231) binding

Sites not aligning to the query:

274 binding

2wzmA Crystal structure of a mycobacterium aldo-keto reductase in its apo and liganded form (see paper)
38% identity, 96% coverage: 2:256/267 of query aligns to 12:264/274 of 2wzmA

query
sites
2wzmA

S

T

I

L

P

P

A

V

F

V

G

G

L

I

G

G

T

V

F

G

R

E

L

L

Q

S

G

D

Q

S

V

E

V

A

I

E

D

R

S

S

V

V

S

S

T

A

G

A

L

L

E

E

L

A

G

G

Y

Y

R

R

V

L

I

I

D
|
D

T

T

A

A

Q

A

I

A

Y
|
Y

K

G

N

N

E

E

A

A

E

A

V

V

G

G

Q

R

A

A

I

I

A

A

S

S

G

G

I

I

A

P

R

R

D

D

E

E

L

I

F

Y

I

V

T

T

S

T

K
|
K

I

L

W

A

V

T

A

P

N

D

F

Q

A

G

K

F

D

T

R

S

L

S

I

Q

D

A

S

A

L

A

K

R

E

A

S

S

L

L

N

E

K

R

L

L

Q

G

T

L

D

D

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

I

H
|
H

W

W

P

P

S

G

P

G

E

D

D

T

Q

S

V

K

P

Y

V

V

E

D

E

S

F

W

M

-

G

G

A

G

L

L

L

M

Q

K

A

V

K

K

Q

E

L

D

G

G

L

I

T

A

R

R

K

S

I

I

G

G

V

V

S

C

N

N

F

F

T

G

V

A

D

E

L

D

M

L

Q

E

Q

T

A

-

I

I

T

V

A

S

I

L

G

T

A

Y

E

F

N

T

I

P

A

A

T

V

N

N

Q

Q

I

I

E

E

L

L

H

H

P

P

Y

L

L

L

Q

N

N

Q

R

A

K

A

V

L

V

R

E

E

F

V

A

N

Q

A

S

G

Q

Y

G

N

I

I

R

V

I

T

T

E

S

A

Y
|
Y

M
x
G

T
x
P

L
|
L

A
x
G

Y
x
V

G
|
G

E

R

V

L

L
|
L

K

D

D

H

P

P

L

A

I

V

Q

T

Q

A

I

I

A

A

D

E

R

A

L

H

Q

G

A

R

T

T

P

A

A
|
A

Q

Q

V

V

T

L

L

L

A

R

W

W

A

S

M

I

Q

Q

L

L

G

G

Y

N

A

V

V

V

I
|
I

P

S

S
x
R

S
|
S

T

A

K

N

R

P

A

E

N
x
R

L

I

Q

A

G

S

N
|
N

L

L

Q

D

A

V

C

F

A

G

L

F

T

E

L

L

S

T

D

A

A

D

D

E

M

M

A

E

L

T

I

L

A

N

A

G

L

L

D

D

R

D

G

G

Q

T

R

R

L

F

active site: D44 (= D34), Y49 (= Y39), K74 (= K64), H107 (= H97)
binding [(2r,3r,4r,5r)-5-(6-amino-9h-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2r,3s,4s)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate: Y186 (= Y178), G187 (≠ M179), P188 (≠ T180), L189 (= L181), G190 (≠ A182), V191 (≠ Y183), G192 (= G184), L195 (= L187), A212 (= A204), I227 (= I219), R229 (≠ S221), S230 (= S222), R235 (≠ N227), N239 (= N231)

Sites not aligning to the query:

binding [(2r,3r,4r,5r)-5-(6-amino-9h-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2r,3s,4s)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate: 265

1m9hA Corynebacterium 2,5-dkgr a and phe 22 replaced with tyr (f22y), lys 232 replaced with gly (k232g), arg 238 replaced with his (r238h)and ala 272 replaced with gly (a272g)in presence of nadh cofactor (see paper)
40% identity, 94% coverage: 2:253/267 of query aligns to 12:263/277 of 1m9hA

query
sites
1m9hA

S

S

I

I

P

P

A

Q

F

L

G

G

L

Y

G
|
G

T

V

F
x
Y

R

K

L

V

Q

P

G

P

Q

A

V

D

V

T

I

Q

D

R

S

A

V

V

S

E

T

E

G

A

L

L

E

E

L

V

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

A

I

I

Y
|
Y

K

G

N

N

E

E

A

E

E

G

V

V

G

G

Q

A

A

A

I

I

A

A

S

S

G

G

I

I

A

A

R

R

D

D

E

D

L

L

F

F

I

I

T

T

S

T

K
|
K

I

L

W

W

V

N

A

D

N

R

F

H

A

D

K

G

D

D

R

E

L

P

I

A

D

A

S

A

L

I

K

A

E

E

S

S

L

L

N

A

K

K

L

L

Q

A

T

L

D

D

Y

Q

L

V

D

D

L

L

T

Y

L

L

I

V

H
|
H

W

W

P

P

S

T

P

P

E

A

D

A

Q

D

V

N

P

Y

V

V

E

H

E

A

F

W

M

E

G

-

A

K

L

M

L

I

Q

E

A

L

K

R

Q

A

L

A

G

G

L

L

T

T

R

R

K

S

I

I

G

G

V

V

S

S

N

N

F

H

T

L

V

V

D

P

L

H

M

L

Q

E

Q

R

A

I

I

V

T

A

A

A

I

T

G

G

A

V

E

V

N

P

I

-

A

A

T

V

N

N

Q
|
Q

I

I

E

E

L

L

H

H

P

P

Y

A

L

Y

Q

Q

N

Q

R

R

K

E

V

I

V

T

E

D

F

W

A

A

Q

A

S

A

Q

H

G

D

I

V

R

K

I

I

T

E

S

S

Y
x
W

M
x
G

T
x
P

L
|
L

A

G

Y
x
Q

G

G

-

K

-

Y

E

D

V

L

L

F

K

G

D

A

P

E

L

P

I

V

Q

T

Q

A

I

A

A

A

D

A

R

A

L

H

Q

G

A

K

T

T

P

P

A
|
A

Q

Q

V

A

T

V

L

L

A

R

W

W

A

H

M

L

Q

Q

L

K

G

G

Y

F

A

V

V

V

I
x
F

P
|
P

S
x
G

S

S

T

V

K

R

R

R

A

E

N
x
H

L

L

Q

E

G

E

N
|
N

L

L

Q

D

A

V

C

F

A

D

L

F

T

D

L

L

S

T

D

D

A

T

D

E

M

I

A

A

L

A

I

I

A

D

A

A

L

M

D

D

R

P

G

G

active site: D44 (= D34), Y49 (= Y39), K74 (= K64), H107 (= H97)
binding nicotinamide-adenine-dinucleotide: G19 (= G9), Y21 (≠ F11), Y49 (= Y39), H107 (= H97), Q160 (= Q152), W186 (≠ Y178), G187 (≠ M179), P188 (≠ T180), L189 (= L181), Q191 (≠ Y183), A214 (= A204), F229 (≠ I219), P230 (= P220), G231 (≠ S221), H237 (≠ N227), N241 (= N231)

P14065 Glycerol 2-dehydrogenase (NADP(+)); Galactose-inducible crystallin-like protein 1; EC 1.1.1.156 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
31% identity, 99% coverage: 3:266/267 of query aligns to 20:305/312 of P14065

query
sites
P14065

I

I

P

P

A

Q

F

I

G

G

L

L

G

G

T

T

F

W

R
x
Q

L

S

Q

K

G

E

Q

N

V

D

V

A

I

Y

D

K

S

A

V

V

S

L

T

T

G

A

L

L

E

K

L

D

G

G

Y

Y

R

R

V

H

I

I

D

D

T

T

A

A

Q

A

I

I

Y
|
Y

K

R

N

N

E

E

A

D

E

Q

V

V

G

G

Q

Q

A

A

I

I

A

K

A

D

S

S

G

G

I

V

A

P

R

R

D

E

E

E

L

I

F

F

I

V

T

T

S

T

K

K

I

L

W

W

V

C

A

T

N

Q

F

H

A

H

K

E

D

P

R

E

L

V

I

-

D

-

S

A

L

L

K

D

E

Q

S

S

L

L

N

K

K

R

L

L

Q

G

T

L

D

D

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

M

H

H

W

W

P

P

S

A

P

R

E

L

D

D

-

P

-

A

-

Y

-

I

-

K

-

N

-

E

-

D

-

I

-

L

Q

S

V

V

P

P

V

T

E

K

-

D

-

G

-

S

-

R

-

A

-

V

-

D

-

I

-

T

-

N

-

W

-

N

F

F

M

I

G

K

A

T

-

W

-

E

-

L

L

M

L

Q

Q

E

A

L

K

P

Q

K

L

T

G

G

L

K

T

T

R

K

K

A

I

V

G

G

V

V

S

S

N

N

F

F

T

S

V

I

D

N

L

N

M

L

Q

K

Q

D

A

L

I

L

T

A

A

S

I

Q

G

G

A

N

E

K

-

L

N

T

I

P

A

A

T

A

N

N

Q

Q

I

V

E

E

L

I

H

H

P

P

Y

L

L

L

Q

P

N

Q

R

D

K

E

V

L

V

I

E

N

F

F

A

C

Q

K

S

S

Q

K

G

G

I

I

R

V

I

V

T

E

S

A

Y

Y

M

S

T

P

L

L

A

G

Y

S

G

T

E

D

-

A

-

P

V

L

L

L

K

K

D

E

P

P

L

V

I

I

Q

L

Q

E

I

I

A

A

D

K

R

K

L

N

Q

N

A

V

T

Q

P

P

A

G

Q

H

V

V

T

V

L

I

A

S

W

W

A

H

M

V

Q

Q

L

R

G

G

Y

Y

A

V

V

V

I

L

P

P

S
x
K

S

S

T

V

K
x
N

R

P

A

D

N
x
R

L

I

Q

K

G

T

N

N

L

R

Q

K

A

I

C

F

A

T

L

L

T

S

L

T

S

E

D

D

A

F

D

E

M

A

A

I

L

N

I

N

A

I

A

S

L

K

D

E

R

K

G

G

Q

E

R

K

L

-

T

-

S

-

P

-

K

R

G

V

I

V

A

H

P

P

Q

N

W

W

Q29 (≠ R12) mutation to K: Decreases catalytic activity.
Y56 (= Y39) mutation to L: Loss of catalytic activity.
K264 (≠ S221) mutation to R: Decreases catalytic activity.
N267 (≠ K224) mutation to Q: Decreases catalytic activity.
R270 (≠ N227) mutation R->H,Y,K: Decreases catalytic activity.

Q9GV41 9,11-endoperoxide prostaglandin H2 reductase; Prostaglandin F2-alpha synthase; EC 1.1.1.- from Trypanosoma brucei brucei
33% identity, 95% coverage: 3:255/267 of query aligns to 15:264/276 of Q9GV41

query
sites
Q9GV41

I

M

P

P

A

V

F

L

G

G

L

F

G

G

T
x
M

F
x
W

R

K

L

L

Q

Q

-

D

G

G

Q

N

V

E

V

A

I

E

D

T

S

A

V

T

S

M

T

W

G

A

L

I

E

K

L

S

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

A

I

I

Y

Y

K

K

N

N

E

E

A

E

E

S

V

A

G

G

Q

R

A

A

I

I

A

A

A

S

S

C

G

G

I

V

A

P

R

R

D

E

E

E

L

L

F

F

I

V

T

T

S

T

K

K

I

L

W

W

V

N

A

S

N

D

F

Q

A

G

K

Y

D

E

R

S

L

T

I

L

D

S

S

A

L

F

K

E

E

K

S

S

L

I

N

K

K

K

L

L

Q

G

T

L

D

E

Y

Y

L

V

D

D

L

L

T

Y

L

L

I

I

H

H

W

W

P

P

S

G

P

K

E

D

D

K

Q

F

V

I

P

D

V

T

E

W

E

K

F

A

M

F

G

E

A

K

L

L

L

Y

Q

A

A

D

K

K

Q

K

L

V

G

-

L

-

T

-

R

R

K

A

I

I

G

G

V

V

S
|
S

N
|
N

F

F

T

H

V

E

D

H

L

H

M

I

Q

E

A

L

I

L

T

K

A

H

I

C

G

K

A

V

E

A

N

P

I

M

A

-

T

V

N

N

Q
|
Q

I

I

E

E

L

L

H

H

P

P

Y

L

L

L

Q

N

N

Q

R

K

K

A

V

L

V

C

E

E

F

Y

A

C

Q

K

S

S

Q

K

G

N

I

I

R

A

I

V

T

T

S

A

Y
x
W

M
x
S

T
x
P

L
|
L

A
x
G

Y
x
Q

G

G

E

H

V

L

L

V

K

E

D

D

P

A

L

R

I

L

Q

K

Q

A

I

I

A

G

D

G

R

K

L

Y

Q

G

A

K

T

T

P

A

A

A

Q

Q

V

V

T

M

L

L

A

R

W

W

A

E

M

I

Q

Q

L

A

G

G

Y

V

A

I

V

T

I

I

P

P

S
x
K

S
|
S

T
x
G

K

N

R

E

A

A

N
x
R

L
x
I

Q
x
K

G
x
E

N
|
N

L

G

Q

N

A

I

C

F

A

D

L

F

T

E

L

L

S

T

D

A

A

E

D

D

M

I

A

Q

L

V

I

I

A

D

A

G

L

M

D

N

R

A

G

G

Q

H

R

R

MW 22:23 (≠ TF 10:11) binding
D47 (= D34) binding
SN 139:140 (= SN 129:130) binding
Q161 (= Q152) binding
WSPLGQ 187:192 (≠ YMTLAY 178:183) binding
KSG 230:232 (≠ SST 221:223) binding
RIKEN 236:240 (≠ NLQGN 227:231) binding

1vbjA The crystal structure of prostaglandin f synthase from trypanosoma brucei
33% identity, 95% coverage: 3:255/267 of query aligns to 20:269/281 of 1vbjA

query
sites
1vbjA

I

M

P

P

A

V

F

L

G

G

L

F

G
|
G

T
x
M

F
x
W

R

K

L

L

Q

Q

-

D

G

G

Q

N

V

E

V

A

I

E

D

T

S

A

V

T

S

M

T

W

G

A

L

I

E

K

L

S

G

G

Y

Y

R

R

V

H

I

I

D
|
D

T

T

A

A

Q

A

I

I

Y
|
Y

K

K

N

N

E

E

A

E

E

S

V

A

G

G

Q

R

A

A

I

I

A

A

A

S

S

C

G

G

I

V

A

P

R

R

D

E

E

E

L

L

F

F

I

V

T

T

S

T

K
|
K

I

L

W

W

V

N

A

S

N

D

F

Q

A

G

K

Y

D

E

R

S

L

T

I

L

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A

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E

E

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A

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K

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K

L

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G

-

L

-

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-

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N

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x
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active site: D52 (= D34), Y57 (= Y39), K82 (= K64), H115 (= H97)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G26 (= G9), M27 (≠ T10), W28 (≠ F11), D52 (= D34), Y57 (= Y39), H115 (= H97), N145 (= N130), Q166 (= Q152), W192 (≠ Y178), S193 (≠ M179), P194 (≠ T180), L195 (= L181), Q197 (≠ Y183), G198 (= G184), V201 (≠ L187), A218 (= A204), I233 (= I219), K235 (≠ S221), S236 (= S222), G237 (≠ T223), R241 (≠ N227), E244 (≠ G230), N245 (= N231)

3d3fA Crystal structure of yvgn and cofactor NADPH from bacillus subtilis (see paper)
37% identity, 96% coverage: 1:256/267 of query aligns to 14:266/275 of 3d3fA

query
sites
3d3fA

M

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Y

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N

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F

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K

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K

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R

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active site: D48 (= D34), Y53 (= Y39), K78 (= K64), H111 (= H97)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G22 (= G9), F24 (= F11), D48 (= D34), Y53 (= Y39), H111 (= H97), S140 (= S129), N141 (= N130), Q162 (= Q152), W188 (≠ Y178), S189 (≠ M179), P190 (≠ T180), L191 (= L181), Q193 (≠ Y183), L197 (= L187), I229 (= I219), K231 (≠ S221), S232 (= S222), K234 (= K224), R237 (≠ N227), E240 (≠ G230), N241 (= N231)

7f7mA Akr4c17 in complex with NADP+ and glyphosate
37% identity, 97% coverage: 3:262/267 of query aligns to 12:297/309 of 7f7mA

query
sites
7f7mA

I

I

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N

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G

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A

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G

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G

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N

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L

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x
S

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x
P

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G

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I

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A

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W

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L

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P

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K

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S

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T

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N

R

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A

E

N
x
R

L

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G

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N
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N

L

L

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A

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C

Y

A

D

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L

I

S

P

D

D

A

D

D

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M

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A

A

L

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I

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-

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-

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-

I

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A

A

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L

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binding glyphosate: Y48 (= Y39), W79 (= W66), H110 (= H97), W111 (= W98)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G18 (= G9), T19 (= T10), W20 (≠ F11), D43 (= D34), Y48 (= Y39), H110 (= H97), Q175 (= Q152), Y201 (= Y178), S202 (≠ M179), P203 (≠ T180), L204 (= L181), S206 (≠ Y183), P207 (vs. gap), A234 (= A204), L249 (≠ I219), P250 (= P220), K251 (≠ S221), S252 (= S222), T253 (= T223), R257 (≠ N227), N261 (= N231)

Query Sequence

>Pf1N1B4_128 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_128
MSIPAFGLGTFRLQGQVVIDSVSTGLELGYRVIDTAQIYKNEAEVGQAIAASGIARDELF
ITSKIWVANFAKDRLIDSLKESLNKLQTDYLDLTLIHWPSPEDQVPVEEFMGALLQAKQL
GLTRKIGVSNFTVDLMQQAITAIGAENIATNQIELHPYLQNRKVVEFAQSQGIRITSYMT
LAYGEVLKDPLIQQIADRLQATPAQVTLAWAMQLGYAVIPSSTKRANLQGNLQACALTLS
DADMALIAALDRGQRLTSPKGIAPQWD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory