Comparing Pf1N1B4_1693 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1693 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
46% identity, 83% coverage: 40:258/264 of query aligns to 4:223/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
46% identity, 83% coverage: 40:258/264 of query aligns to 4:225/226 of 4zv1A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
45% identity, 86% coverage: 33:258/264 of query aligns to 3:228/229 of 5t0wA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
38% identity, 87% coverage: 33:262/264 of query aligns to 6:234/237 of 3vv5A
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
38% identity, 87% coverage: 33:262/264 of query aligns to 10:238/241 of 3vvfA
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
38% identity, 87% coverage: 33:262/264 of query aligns to 10:238/241 of 3vveA
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
38% identity, 87% coverage: 33:262/264 of query aligns to 10:238/241 of 3vvdA
2ylnA Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
36% identity, 90% coverage: 27:263/264 of query aligns to 1:238/240 of 2ylnA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
36% identity, 86% coverage: 33:259/264 of query aligns to 3:228/229 of 6svfA
4g4pA Crystal structure of glutamine-binding protein from enterococcus faecalis at 1.5 a (see paper)
34% identity, 82% coverage: 44:259/264 of query aligns to 18:235/235 of 4g4pA
1hslA Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
34% identity, 84% coverage: 42:262/264 of query aligns to 6:235/238 of 1hslA
P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
34% identity, 84% coverage: 42:262/264 of query aligns to 28:257/260 of P02910
Sites not aligning to the query:
8eyzA Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
34% identity, 81% coverage: 44:258/264 of query aligns to 7:221/226 of 8eyzA
P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see 3 papers)
33% identity, 84% coverage: 42:262/264 of query aligns to 28:257/260 of P0AEU0
Sites not aligning to the query:
4i62A 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
31% identity, 87% coverage: 33:262/264 of query aligns to 1:235/237 of 4i62A
5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid. (see paper)
30% identity, 84% coverage: 42:263/264 of query aligns to 4:253/256 of 5otcA
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
35% identity, 83% coverage: 40:258/264 of query aligns to 1:222/224 of 4ymxA
5ovzA High resolution structure of the pbp noct in complex with nopaline (see paper)
30% identity, 86% coverage: 38:263/264 of query aligns to 1:254/259 of 5ovzA
5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid (see paper)
30% identity, 84% coverage: 42:263/264 of query aligns to 4:253/254 of 5otaA
5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine. (see paper)
30% identity, 84% coverage: 42:263/264 of query aligns to 4:253/254 of 5ot9A
>Pf1N1B4_1693 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1693
MNFSALRRNLLVGSLGLALSAGLLGQAVAGEQLQKIKDAGVINVGLEGTYPPFSFVDEAG
KLSGFEVEFSEALAKELGVKVKLQPTKWEGILAALESKRLDAVINQVTITEERKKKYDFS
TPYTVSGIQALTLTKNKDTIKTAADLAGKKVGVGLGTNYEQWVKENVPKADVRTYEDDPS
KFQDLRVGRIDAILIDRLAALEYARKAKDTAAAGEAFSRQEAGIALRKGEPELLAAVNKA
IDKLRADGTLKKLSEKYFSADVTQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory