Comparing Pf1N1B4_1702 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1702 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
45% identity, 92% coverage: 31:372/373 of query aligns to 2:343/343 of P30750
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
45% identity, 92% coverage: 31:372/373 of query aligns to 3:344/344 of 3tuzC
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
45% identity, 92% coverage: 31:372/373 of query aligns to 3:344/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
45% identity, 92% coverage: 31:372/373 of query aligns to 3:344/344 of 6cvlD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
48% identity, 62% coverage: 45:275/373 of query aligns to 13:241/241 of 4u00A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
44% identity, 61% coverage: 45:271/373 of query aligns to 14:239/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
44% identity, 61% coverage: 45:271/373 of query aligns to 14:239/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
44% identity, 61% coverage: 45:271/373 of query aligns to 14:239/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
44% identity, 61% coverage: 45:271/373 of query aligns to 14:239/242 of 2oljA
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
43% identity, 61% coverage: 45:273/373 of query aligns to 12:239/240 of 4ymuJ
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 73% coverage: 43:314/373 of query aligns to 35:320/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 73% coverage: 43:314/373 of query aligns to 35:320/382 of 7aheC
7ahdC Opua (e190q) occluded (see paper)
38% identity, 60% coverage: 43:267/373 of query aligns to 35:260/260 of 7ahdC
Sites not aligning to the query:
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
41% identity, 59% coverage: 31:249/373 of query aligns to 2:216/222 of 8i6rB
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 58% coverage: 31:248/373 of query aligns to 2:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
39% identity, 58% coverage: 31:248/373 of query aligns to 2:223/230 of 1l2tA
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
38% identity, 63% coverage: 45:278/373 of query aligns to 371:607/611 of 8j5qD
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
43% identity, 63% coverage: 27:262/373 of query aligns to 5:245/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
43% identity, 63% coverage: 27:262/373 of query aligns to 1:241/258 of 1b0uA
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
38% identity, 63% coverage: 45:278/373 of query aligns to 371:607/608 of 8j5tD
Sites not aligning to the query:
>Pf1N1B4_1702 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1702
MTAAIQRRLELPEPHNATQTELHPELNRAHVRFIGLGKTYNGQQGPVAALHGIDLAIQRG
EVFGIIGRSGAGKSSLIRTINRLEQPSSGRVLIDQVDIGEFDEDRLVALRRRIGMIFQHF
NLMSAKTVWQNVELPLKVAGVPKEQRERKVRELLELVGLQGKHKSYPAQLSGGQKQRVGI
ARALVHDPEILLCDEATSALDPETTQSILGLLREINQRLGLTIVLITHEMAVIRDICDRV
VVLEHGQIVEQGPVWEVFGNPQHEVSKTLLAPLQHALPEELQSRLRPQPQSSDAAVVLRL
QFTGSTSEEPDLAALFSALGGRVRLLQGGVERIQGHALGQLLLAVTGSSLSAEELRQRAG
NWAQQVEVLGYVV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory