Comparing Pf1N1B4_1703 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1703 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
24% identity, 89% coverage: 7:196/214 of query aligns to 16:201/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
24% identity, 89% coverage: 7:196/214 of query aligns to 16:201/215 of 4ymtC
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
32% identity, 52% coverage: 59:170/214 of query aligns to 60:165/506 of A0A0H2ZQB9
Sites not aligning to the query:
>Pf1N1B4_1703 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1703
MWFDRLLQGFIDTFLMVGVSSLIALLAGIPLAVILVTSSKGGIYAAPALNRALGAFVNLF
RSIPFLILMVALIPFTRLIVGTTYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLIEAA
QAMGCRRWHIVWHVLLPEALPGIVGGFTITLVTMINSSAMAGAIGAGGLGDIAYRYGYQR
FDSQIMLTVIVLLVVLVAVIQLGGDRLARGLNKR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory