Comparing Pf1N1B4_183 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_183 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
29% identity, 54% coverage: 9:241/433 of query aligns to 39:260/444 of Q8NLB7
Sites not aligning to the query:
8et9A Cryo-em structure of the organic cation transporter 2 in complex with 1-methyl-4-phenylpyridinium (see paper)
22% identity, 88% coverage: 24:403/433 of query aligns to 122:486/517 of 8et9A
>Pf1N1B4_183 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_183
MHTTPQPRRAAAAAFIGTTIEFYDFYIYATAAALVLGQVFFPSHDPVMSTLAAFGSFAVG
FIARPMAGMVFGHLGDRLGRKKMLLVTMALMGLATTGIGMLPSYASAGIWAPIGLIVLRL
IQGISVGGEWGGAVLMASEHAPAKRKTFYASFAQLGSPAGLLLALIAFRLVTSLEPEDFL
AWGWRLPFLASGVLMMVGLMIRSGVHESPEFAKAKDNNETAKYPVKDVIRTCWRQILFAA
AAVTIGSAGFFFTNTFMITYVTQYQGIPRSTILDCLFLVTVIQLLSQPLSALLAERIGEG
RFLKLVALLCMVTPYPMFLLVGTQNIVLMTVGIALAVVILSALYAVIAGYMTQAFPVHLR
YSGISIAYQLSCALAGGTTPLIGTLLASKFSGQWLPLAVFFTLLSALSLIGVCGLARLRA
NPVATHAAKEVYS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory