Comparing Pf1N1B4_205 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_205 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6rl5G The first crystal structure of the daba aminotransferase ectb in the ectoine biosynthesis pathway of the model organism chromohalobacter salexigens dsm 3034 (see paper)
36% identity, 91% coverage: 37:462/470 of query aligns to 7:422/422 of 6rl5G
1wkhA Acetylornithine aminotransferase from thermus thermophilus hb8
38% identity, 87% coverage: 51:457/470 of query aligns to 21:380/387 of 1wkhA
Sites not aligning to the query:
1wkgA Acetylornithine aminotransferase from thermus thermophilus hb8
38% identity, 87% coverage: 51:457/470 of query aligns to 21:380/387 of 1wkgA
Sites not aligning to the query:
1vefA Acetylornithine aminotransferase from thermus thermophilus hb8
38% identity, 87% coverage: 51:457/470 of query aligns to 21:380/387 of 1vefA
Sites not aligning to the query:
Q5SHH5 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
38% identity, 87% coverage: 51:457/470 of query aligns to 29:388/395 of Q5SHH5
O50131 Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see paper)
33% identity, 90% coverage: 46:467/470 of query aligns to 33:446/454 of O50131
7vo1A Structure of aminotransferase-substrate complex (see paper)
33% identity, 90% coverage: 46:467/470 of query aligns to 31:444/452 of 7vo1A
7vntA Structure of aminotransferase-substrate complex (see paper)
33% identity, 90% coverage: 46:467/470 of query aligns to 31:444/452 of 7vntA
7vnoA Structure of aminotransferase (see paper)
33% identity, 90% coverage: 46:467/470 of query aligns to 31:444/452 of 7vnoA
P50457 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli (strain K12) (see paper)
35% identity, 87% coverage: 54:464/470 of query aligns to 27:420/421 of P50457
O58478 Alanine/serine racemase; ASR; Ala/Ser racemase; EC 5.1.1.-; EC 5.1.1.1 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see paper)
31% identity, 89% coverage: 47:463/470 of query aligns to 50:458/474 of O58478
4uoxC Crystal structure of ygjg in complex with pyridoxal-5'-phosphate and putrescine (see paper)
33% identity, 87% coverage: 63:470/470 of query aligns to 76:454/456 of 4uoxC
Sites not aligning to the query:
4uoxA Crystal structure of ygjg in complex with pyridoxal-5'-phosphate and putrescine (see paper)
33% identity, 87% coverage: 63:470/470 of query aligns to 72:450/453 of 4uoxA
Sites not aligning to the query:
P42588 Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli (strain K12) (see paper)
33% identity, 87% coverage: 63:470/470 of query aligns to 78:456/459 of P42588
P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12) (see 2 papers)
32% identity, 94% coverage: 27:466/470 of query aligns to 3:424/426 of P22256
1sffA Structure of gamma-aminobutyrate aminotransferase complex with aminooxyacetate (see paper)
32% identity, 94% coverage: 27:466/470 of query aligns to 2:423/425 of 1sffA
1sf2A Structure of e. Coli gamma-aminobutyrate aminotransferase (see paper)
32% identity, 94% coverage: 27:466/470 of query aligns to 2:423/425 of 1sf2A
8ht4B Crystal structure of acetylornithine aminotransferase complex with plp from corynebacterium glutamicum
35% identity, 88% coverage: 40:452/470 of query aligns to 1:378/390 of 8ht4B
2eh6A Crystal structure of acetylornithine aminotransferase from aquifex aeolicus vf5
31% identity, 87% coverage: 48:458/470 of query aligns to 9:370/375 of 2eh6A
O66442 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Aquifex aeolicus (strain VF5)
31% identity, 87% coverage: 48:458/470 of query aligns to 10:371/376 of O66442
>Pf1N1B4_205 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_205
MSVAISLIEDQPARIVPTPAETLYQFNESPLLARQSQQESNARSYPRRIPLALKRAKGIY
VEDVEGRSFIDCLAGAGTLALGHNHPVVIEAIQQVLTDELPLHTLDLTTPVKDQFVQDLF
GLLPPALAAEAKIQFCGPTGTDAVEAALKLVRTATGRSTVLSFQGGYHGMSQGALSLMGS
LGPKKPLGALLSSGVQFMPYPYDYRCPFGLGGAQGVQVNLNYLENLLNDPEAGVQLPAAV
IVEAVQGEGGVIPADLDWLRGLRRITEKAGVALIVDEIQSGFARTGKMFAFEHAGIIPDV
VVMSKAIGGSLPLAVVVYRDWLDTWLPGAHAGTFRGNQMAMAAGSAVMRYLTEHKVCEHA
AAMGERLSEHLHILQRDFPQLGDIRGRGLMLGVELVDPTGAPDAQGHPPIFARLAPLVQR
ECLKRGLILELGGRHGGVVRFLPPLVITAAEIDRVADIFGRAMAAATASL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory