SitesBLAST
Comparing Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
4lhdA Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
61% identity, 98% coverage: 9:950/957 of query aligns to 12:949/952 of 4lhdA
- binding bicarbonate ion: S68 (≠ D65), Y70 (≠ E67), G71 (≠ A68), T137 (≠ Q134), D141 (= D138), D480 (≠ H475), S509 (= S504), G837 (= G839), F838 (= F840), E863 (= E865), R866 (= R868), W923 (≠ H924), S948 (≠ A949)
- binding glycine: Y120 (= Y117), S515 (= S510), H609 (= H604), N633 (= N628), F664 (≠ Y659), E665 (= E660), A666 (≠ E661), K712 (= K707), G802 (= G804), N803 (≠ R805), T842 (= T844), W845 (≠ F847), L903 (vs. gap), I904 (= I905), G906 (= G907), W908 (= W909), Q914 (≠ I915)
- binding phosphate ion: Q62 (≠ D59), L63 (= L60), P64 (= P61), W559 (= W554), D567 (= D562), K731 (≠ R726), S732 (≠ A727), H733 (= H728)
Sites not aligning to the query:
Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
55% identity, 99% coverage: 6:955/957 of query aligns to 69:1029/1037 of Q94B78
- C98 (≠ L35) modified: S-glutathionyl cysteine; transient
- C402 (= C335) modified: S-glutathionyl cysteine
- C463 (≠ V395) modified: S-glutathionyl cysteine
- C777 (= C710) modified: S-glutathionyl cysteine; transient
- C943 (≠ I870) modified: S-glutathionyl cysteine; transient
- C1022 (= C948) modified: S-glutathionyl cysteine; transient
6i33A Crystal structure of human glycine decarboxylase (p-protein)
56% identity, 98% coverage: 14:953/957 of query aligns to 13:950/950 of 6i33A
- binding bicarbonate ion: R413 (= R414), L414 (≠ I415)
- binding pyridoxal-5'-phosphate: C334 (= C335), T335 (= T336), S506 (= S510), S566 (= S570), G567 (= G571), A568 (= A572), E571 (= E575), H600 (= H604), T602 (= T606), D676 (= D680), A678 (= A682), H698 (= H702), N700 (= N704), H702 (= H706), K703 (= K707)
6i34B Crystal structure of neanderthal glycine decarboxylase (p-protein)
56% identity, 98% coverage: 14:952/957 of query aligns to 11:954/954 of 6i34B
- binding pyridoxal-5'-phosphate: C332 (= C335), T333 (= T336), S507 (= S510), S567 (= S570), G568 (= G571), A569 (= A572), E572 (= E575), H601 (= H604), T603 (= T606), D677 (= D680), A679 (= A682), H699 (= H702), N701 (= N704), H703 (= H706), K704 (= K707)
6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
56% identity, 98% coverage: 14:953/957 of query aligns to 13:953/953 of 6i35A