SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf1N1B4_2421 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
31% identity, 50% coverage: 132:271/281 of query aligns to 60:199/506 of A0A0H2ZQB9

query
sites
A0A0H2ZQB9
L
 
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M
 
F
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Q
T
 
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I
P
 
P
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L
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A
Y
 
L
L
 
L
I
 
G
P
 
L
T
 
F
L
 
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P
L
 
L
F
 
M
G
 
G
L
 
I
G
 
G
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L
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P
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A
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L
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A
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L
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I
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Y
A
 
A
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I
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A
 
P
P
 
I
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L
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T
Y
 
I
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G
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L
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K
D
 
G
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I
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D
D
 
P
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S
L
 
L
M
 
Q
D
 
E
A
 
A
G
 
G
K
 
I
A
 
A
F
 
F
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G
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M
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T
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R
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W
Q
 
E
L
 
R
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L
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F
E
 
E
L
 
I
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P
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L
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A
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M
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M
A
 
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G
 
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L
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A
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T
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L
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A
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T
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L
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G
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A
D
 
G
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G
L
 
L
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G
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L
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D
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A
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Sites not aligning to the query:

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
27% identity, 60% coverage: 103:270/281 of query aligns to 69:236/553 of B5Z7I3

query
sites
B5Z7I3
L
 
F
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L
C
 
V
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L
L
 
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I
 
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G
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V
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N
L
 
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S
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-
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G
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G
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L
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L
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A
 
G
I
 
L
A
 
L
A
 
P
P
 
I
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V
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Y
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T
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Y
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G
 
A
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K
D
 
E
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E
E
 
E
L
 
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A
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A
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A
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G
 
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Sites not aligning to the query:

Query Sequence

>Pf1N1B4_2421 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)
MLIDQKIPLGQYIAGFVEWLTQNGASTFDAIAVSLETMIHGVTFALTWFNPLALIGLIAL
LAHFIQRKWGLTVFVIASFLLILNLGYWQETMETLAQVLFATLVCVLIGVPLGIVAAHKP
MFYTVMRPVLDLMQTVPTFVYLIPTLTLFGLGVVPGLISTVVFAIAAPIRLTYLGIRDVP
DELMDAGKAFGCSRRQLLSRIELPHAMPSIAAGITQCIMLSLSMVVIAALVGADGLGKPV
VNALNTADIALGFEAGLAIVLLAIMLDRICKQPDAKVGGDA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory