SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf1N1B4_2421 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
27% identity, 60% coverage: 103:270/281 of query aligns to 69:236/553 of B5Z7I3

query
sites
B5Z7I3
L
 
F
V
 
L
C
 
V
V
 
L
L
 
V
I
 
F
G
 
G
V
 
V
P
 
L
L
 
I
G
 
G
I
 
V
V
 
F
A
 
A
A
 
F
H
 
Y
K
 
N
P
 
S
M
 
K
F
 
A
Y
 
R
T
 
A
V
 
F
M
 
L
R
 
L
P
 
P
V
 
V
L
 
V
D
 
N
L
 
F
M
 
L
Q
 
Y
T
 
T
V
 
I
P
 
P
T
 
S
-
 
L
-
 
A
-
 
L
F
 
F
V
 
A
Y
 
L
L
 
F
I
 
I
P
 
P
T
 
V
L
 
I
T
 
-
L
 
-
F
 
-
G
 
G
L
 
V
G
 
G
V
 
L
V
 
K
P
 
N
G
 
A
L
 
L
I
 
L
S
 
V
T
 
L
V
 
V
V
 
L
F
 
Y
A
 
G
I
 
L
A
 
L
A
 
P
P
 
I
I
 
V
R
 
Y
L
 
S
T
 
T
Y
 
Y
L
 
N
G
 
A
I
 
L
R
 
K
D
 
E
V
 
V
P
 
R
D
 
E
E
 
E
L
 
V
M
 
I
D
 
K
A
 
A
G
 
A
K
 
I
A
 
G
F
 
L
G
 
G
C
 
C
S
 
N
R
 
P
R
 
K
Q
 
E
L
 
L
L
 
F
S
 
F
R
 
R
I
 
V
E
 
H
L
 
F
P
 
L
H
 
L
A
 
A
M
 
I
P
 
P
S
 
Q
I
 
I
A
 
L
A
 
A
G
 
G
I
 
L
T
 
R
Q
 
I
C
 
A
I
 
V
M
 
V
L
 
M
S
 
L
L
 
V
S
 
A
M
 
M
V
 
A
V
 
G
I
 
I
A
 
G
A
 
A
L
 
L
V
 
I
G
 
G
A
 
A
D
 
G
G
 
G
L
 
L
G
 
G
K
 
Q
P
 
A
V
 
I
V
 
F
N
 
R
A
 
G
L
 
L
N
 
N
T
 
T
A
 
Q
D
 
N
I
 
T
A
 
T
L
 
L
G
 
L
F
 
V
E
 
A
A
 
G
G
 
S
L
 
L
A
 
I
I
 
I
V
 
A
L
 
L
L
 
F
A
 
S
I
 
V
M
 
L
L
 
A
D
 
D
R
 
K
I
 
F
C
 
V

Sites not aligning to the query:

Query Sequence

>Pf1N1B4_2421 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)
MLIDQKIPLGQYIAGFVEWLTQNGASTFDAIAVSLETMIHGVTFALTWFNPLALIGLIAL
LAHFIQRKWGLTVFVIASFLLILNLGYWQETMETLAQVLFATLVCVLIGVPLGIVAAHKP
MFYTVMRPVLDLMQTVPTFVYLIPTLTLFGLGVVPGLISTVVFAIAAPIRLTYLGIRDVP
DELMDAGKAFGCSRRQLLSRIELPHAMPSIAAGITQCIMLSLSMVVIAALVGADGLGKPV
VNALNTADIALGFEAGLAIVLLAIMLDRICKQPDAKVGGDA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory