Comparing Pf1N1B4_2868 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2868 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
37% identity, 97% coverage: 5:251/255 of query aligns to 15:261/265 of P07821
1l7vC Bacterial abc transporter involved in b12 uptake (see paper)
37% identity, 84% coverage: 23:237/255 of query aligns to 21:231/231 of 1l7vC
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
29% identity, 92% coverage: 1:235/255 of query aligns to 2:233/240 of 6mjpA
4fi3C Structure of vitamin b12 transporter btucd-f in a nucleotide-bound state (see paper)
37% identity, 85% coverage: 23:239/255 of query aligns to 21:233/248 of 4fi3C
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 83% coverage: 16:226/255 of query aligns to 16:224/240 of 4ymuJ
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 90% coverage: 1:229/255 of query aligns to 2:228/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 90% coverage: 1:229/255 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 90% coverage: 1:229/255 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 90% coverage: 1:229/255 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 90% coverage: 1:229/255 of query aligns to 3:230/242 of 2oljA
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
31% identity, 89% coverage: 1:226/255 of query aligns to 1:225/276 of Q5M243
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 85% coverage: 1:218/255 of query aligns to 4:230/254 of 1g6hA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/234 of 4p31A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/235 of 6mhzA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/233 of 6b8bA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
30% identity, 92% coverage: 2:235/255 of query aligns to 3:233/238 of 6s8gA
O65934 ABC transporter ATP-binding/permease protein Rv1747; EC 7.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
32% identity, 84% coverage: 12:225/255 of query aligns to 330:540/865 of O65934
Sites not aligning to the query:
3d31A Modbc from methanosarcina acetivorans (see paper)
28% identity, 89% coverage: 1:226/255 of query aligns to 1:216/348 of 3d31A
Sites not aligning to the query:
>Pf1N1B4_2868 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2868
MLRAQNLQIRRGRKIVLTDITLELKPGEVLGVLGPNGAGKSTLLGALCGELQADHGSVWL
DERELNHWAGAQRAQRLAVLPQVSTLDFAFRVEEVVGMGRLPYQSGRVRDGEIVAAALHA
ADARHLSGRSYLALSGGERQRVHLARVLAQLWPGEAGQTLLLDEPTSMLDPLHQHTTLQA
VREFANRGAAVLVILHDLNLAARYCDRLLLLEGGRPVALDTPEQVLRPEPLKAVFGLEVL
VQPHPERGHPLIIAR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory