SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf1N1B4_3178 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3178 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
37% identity, 90% coverage: 15:232/242 of query aligns to 7:213/215 of 4ymtC

query
sites
4ymtC
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I
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L
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M
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G
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F
G
 
I
A
 
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A
 
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I
K
 
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I
R
 
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V
A
 
A
Q
 
S
L
 
S
Y
 
Y
T
 
I
T
 
E
L
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
|
P
D
x
L
L
 
L
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V
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Q
M
 
L
L
 
L
L
 
L
I
 
I
F
 
Y
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N
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G
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L
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M
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Q
W
 
F
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-
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M
 
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E
 
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-
E
 
-
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G
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M
E
 
N
I
 
I
N
 
P
P
 
A
F
 
F
S
 
T
A
 
A
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G
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V
I
 
S
T
 
A
L
 
L
G
 
A
F
 
I
I
x
N
Y
 
S
G
 
S
A
 
A
Y
|
Y
F
 
V
T
 
A
E
 
E
T
 
I
F
 
I
R
 
R
G
 
A
A
 
G
I
 
I
L
 
Q
A
 
A
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V
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D
R
 
P
G
 
G
Q
 
Q
V
 
N
E
 
E
A
 
A
A
 
A
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R
A
 
S
Y
 
L
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M
K
 
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H
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A
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M
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A
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M
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R
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Y
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A
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N
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I
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L
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P
G
 
A
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L
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G
N
 
N
N
x
E
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F
M
 
I
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V
M
|
M
L
 
L
K
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K
A
x
E
T
 
S
A
 
A
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I
V
 
V
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S
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V
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I
G
 
G
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F
A
 
A
D
 
D
L
 
L
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T
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Q
A
 
A
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D
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I
A
 
I
G
 
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K
 
S
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T
Y
 
Y
Q
 
R
L
 
Y
F
 
F
Y
 
E
F
 
P
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Y
V
 
I
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I
A
 
I
A
 
A
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A
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I
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R
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 90% coverage: 15:232/242 of query aligns to 7:213/214 of 4ymwC

query
sites
4ymwC
S
 
S
L
 
M
Q
 
V
G
 
K
F
 
Y
G
 
T
P
 
P
L
 
L
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F
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I
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S
G
 
G
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L
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I
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M
T
 
T
I
 
L
K
 
K
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L
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T
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F
L
 
L
S
 
A
L
 
V
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I
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V
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L
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M
G
 
G
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L
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F
G
 
I
A
 
A
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L
A
 
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K
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D
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F
Y
 
E
F
 
P
L
 
Y
V
 
I
L
 
I
A
 
I
A
 
A
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A
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I
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Y
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R
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R

Query Sequence

>Pf1N1B4_3178 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3178
MFENLLQNLGLSAFSLQGFGPLLMEGTWMTIKLSVLSLLVAVLLGLLGASAKLSKVKLVR
VPAQLYTTLIRGVPDLVLMLLIFYSLQTWLTSFTDFMEWEYIEINPFSAGVITLGFIYGA
YFTETFRGAILAVPRGQVEAATAYGLKRGQRFRFVVFPQMMRFALPGIGNNWMVMLKATA
LVSIIGLADLVKAAQDAGKSTYQLFYFLVLAALIYLVITSASNVVLRWLERRYAAGSREA
VR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory