Comparing Pf1N1B4_3973 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3973 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
25% identity, 90% coverage: 9:267/289 of query aligns to 6:266/285 of 7cagA
>Pf1N1B4_3973 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3973
MSTLAVIRQRHQGYWLSAPALALYFGLLVIPLLLTLVLSFNVFDYSSGINSDAYTLDHYS
SLLGDPYFYEIFLRTFWISALTTLLCVVIGVPEAYILSRMGTPWRSIFLILILTPLLISV
VVRAFGWSLLLGADGLVNQTLQAFGGSPMKLLYTPFAVVIALVHVMLPFMIIPVWTSLQK
LDPAAEQAALSLGASHLTVMRKVVLPQIMPGVLSGTLIVFGLAASSFAIPGLLGGRRIKM
VATLIYDQYLSELNWPMGAAIAVALLLLNLLIMLSWNRMIEGRYQKSLG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory