SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing Pf1N1B4_4109 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4109 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

1co6A Crystal structure of ferrocytochrome c2 from rhodopseudomonas viridis (see paper)
44% identity, 78% coverage: 27:126/129 of query aligns to 2:100/107 of 1co6A

query
sites
1co6A

D

D

A

A

E

A

A

S

G

G

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V

F

F

N

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-

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H
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F

binding heme c: C13 (= C39), C16 (= C42), H17 (= H43), P29 (= P55), S39 (≠ A65), Y47 (= Y73), S48 (= S74), N51 (≠ M77), W58 (= W84), F63 (≠ L89), I67 (= I93), T77 (= T103), K78 (≠ R104), M79 (= M105), F81 (= F107)

P68519 Cytochrome c from Crotalus viridis viridis (Prairie rattlesnake) (see paper)
42% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P68519

query
sites
P68519

G
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G

D

D

A

V

E

E

A

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G2 (= G26) modified: N-acetylglycine

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P68518 Cytochrome c from Crotalus atrox (Western diamondback rattlesnake) (see paper)
42% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P68518

query
sites
P68518

G
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G

D

D

A

V

E

E

A

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G

G

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G2 (= G26) modified: N-acetylglycine

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P68517 Cytochrome c from Crotalus adamanteus (Eastern diamondback rattlesnake) (see paper)
42% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P68517

query
sites
P68517

G
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G

D

D

A

V

E

E

A

K

G

G

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G2 (= G26) modified: N-acetylglycine

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P00038 Cytochrome c from Apis mellifera (Honeybee) (see paper)
41% identity, 78% coverage: 25:124/129 of query aligns to 5:104/108 of P00038

query
sites
P00038

A

A

G

G

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D

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E

C19 (= C39) binding covalent
C22 (= C42) binding covalent

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P00067 Cytochrome c from Tropaeolum majus (Common nasturtium) (Indian cress) (see paper)
46% identity, 80% coverage: 22:124/129 of query aligns to 4:107/111 of P00067

query
sites
P00067

A

A

E

E

A

A

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P

A

A

G

G

D

D

A

N

E

K

A

A

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K

K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00069 Cytochrome c from Guizotia abyssinica (Niger) (Ramtilla)
45% identity, 80% coverage: 22:124/129 of query aligns to 4:107/111 of P00069

query
sites
P00069

A

A

E

E

A

A

-

P

A

A

G

G

D

D

A

A

E

K

A

A

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C

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K

K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00052 Cytochrome c from Vigna radiata var. radiata (Mung bean) (Phaseolus aureus) (see paper)
42% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of P00052

query
sites
P00052

S

S

M

F

Q

D

A

E

E

A

A

P

A

P

G

G

D

N

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K

K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00053 Cytochrome c from Cannabis sativa (Hemp) (Marijuana)
42% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of P00053

query
sites
P00053

S

S

M

F

Q

B

A

Z

E

A

A

P

A

P

G

G

D

B

A

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E

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A

A

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C

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K

K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00058 Cytochrome c from Gossypium barbadense (Sea-island cotton) (Egyptian cotton) (see paper)
43% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of P00058

query
sites
P00058

S

S

M

F

Q

Q

A

Z

E

A

A

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A

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B

A

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A

A

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C

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C
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C

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K

C22 (= C39) binding covalent
C25 (= C42) binding covalent
K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00051 Cytochrome c from Cucurbita maxima (Pumpkin) (Winter squash) (see paper)
42% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of P00051

query
sites
P00051

S

S

M

F

Q

D

A

E

E

A

A

P

A

P

G

G

D

N

A

S

E

K

A

A

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G

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E

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F

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C

C

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C

C

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S

G

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N

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P

P

K
|
K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

V

F

F

W

P

G

G

L

L

S
x
K

D

K

P

P

Q

Q

K

D

I

R

E

A

N

D

L

L

L

I

A

A

Y

Y

L

L

Q

K

K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00015 Cytochrome c, testis-specific from Mus musculus (Mouse) (see paper)
43% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P00015

query
sites
P00015

G
|
G

D

D

A

A

E

E

A

A

G

G

Q

K

K

K

L

I

F

F

N

V

R

Q

I

K

C
|
C

G

A

G

Q

C
|
C

H

H

Q

T

V

V

G

E

T

K

S

G

A

G

R

K

G

H

S

K

F

T

G

G

P

P

Q

N

L

L

N

W

A

G

I

L

F

F

G

G

R

R

P

K

A

T

G

G

S

Q

T

A

T

P

D

G

Y

F

Q

S

Y

Y

S

T

T

D

A

A

M

N

K

K

S

N

S

K

G

G

L

V

I

I

W

W

T

S

R

E

E

E

T

T

L

L

T

M

A

E

Y

Y

I

L

E

E

A

N

P

P

K

K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

I

F

F

W

A

G

G

L

I

S

K

D

K

P

K

Q

S

K

E

I

R

E

E

N

D

L

L

L

I

A

K

Y

Y

L

L

Q

K

G2 (= G26) modified: N-acetylglycine
C15 (= C39) binding covalent
C18 (= C42) binding covalent

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P00083 Cytochrome c2 from Blastochloris viridis (Rhodopseudomonas viridis) (see 2 papers)
43% identity, 76% coverage: 30:127/129 of query aligns to 25:121/127 of P00083

query
sites
P00083

A
x
S

G
|
G

Q
x
E

K
x
Q

L
x
V

F
|
F

N
x
K

R
x
Q

I

-

C
|
C

G
x
L

G
x
V

C
|
C

H
|
H

Q
x
S

V
x
I

G
|
G

T
x
P

S
x
G

A
|
A

R
x
K

G
x
N

S
x
K

F
x
V

G
|
G

P
|
P

Q
x
V

L
|
L

N
|
N

A
x
G

I
x
L

F
|
F

G
|
G

R
|
R

P
x
H

A
x
S

G
|
G

S
x
T

T
x
I

T
x
E

D
x
G

Y
x
F

Q
x
A

Y
|
Y

S
|
S

T
x
D

A
|
A

M
x
N

K
|
K

S
x
N

S
|
S

G
|
G

L
x
I

I
x
T

W
|
W

T
|
T

R
x
E

E
|
E

T
x
V

L
x
F

T
x
R

A
x
E

Y
|
Y

I
|
I

E
x
R

A
x
D

P
|
P

K
|
K

E
x
A

V
x
K

V
x
I

P
|
P

G
|
G

T
|
T

R
x
K

M
|
M

I
|
I

F
|
F

W
x
A

G
|
G

L
x
V

S
x
K

D
|
D

P
x
E

Q
|
Q

K
|
K

I
x
V

E
x
S

N
x
D

L
|
L

L
x
I

A
|
A

Y
|
Y

L
x
I

Q
x
K

T
x
Q

F
|
F

Q
x
N

C33 (= C39) binding covalent
C36 (= C42) binding covalent
H37 (= H43) binding axial binding residue
M99 (= M105) binding axial binding residue

Sites not aligning to the query:

1:20 signal peptide
21 modified: Pyrrolidone carboxylic acid
21:127 modified: mature protein, Cytochrome c2

2aiuA Crystal structure of mouse testicular cytochromE C at 1.6 angstrom (see paper)
43% identity, 77% coverage: 26:124/129 of query aligns to 1:99/104 of 2aiuA

query
sites
2aiuA

G

G

D

D

A

A

E

E

A

A

G

G

Q

K

K

K

L

I

F

F

N

V

R

Q

I

K

C
|
C

G

A

G
x
Q

C
|
C

H
|
H

Q

T

V

V

G

E

T

K

S

G

A

G

R

K

G

H

S

K

F

T

G

G

P
|
P

Q

N

L

L

N

W

A

G

I
x
L

F

F

G

G

R

R

P

K

A

T

G
|
G

S

Q

T

A

T

P

D

G

Y

F

Q

S

Y
|
Y

S
x
T

T

D

A

A

M
x
N

K

K

S

N

S

K

G

G

L

V

I

I

W
|
W

T

S

R

E

E

E

T

T

L

L

T

M

A

E

Y
|
Y

I
x
L

E

E

A

N

P

P

K

K

E

K

V

Y

V

I

P

P

G

G

T
|
T

R
x
K

M
|
M

I

I

F
|
F

W

A

G

G

L

I

S

K

D

K

P

K

Q

S

K

E

I

R

E

E

N

D

L

L

L

I

A

K

Y

Y

L

L

Q

K

binding protoporphyrin ix containing fe: C14 (= C39), Q16 (≠ G41), C17 (= C42), H18 (= H43), P30 (= P55), L35 (≠ I60), G41 (= G66), Y48 (= Y73), T49 (≠ S74), N52 (≠ M77), W59 (= W84), Y67 (= Y92), L68 (≠ I93), T78 (= T103), K79 (≠ R104), M80 (= M105), F82 (= F107)

Q0DI31 Cytochrome c from Oryza sativa subsp. japonica (Rice) (see paper)
42% identity, 84% coverage: 17:124/129 of query aligns to 1:108/112 of Q0DI31

query
sites
Q0DI31

L
x
M

F
x
A

S

S

M

F

Q

S

A

E

E

A

A

P

A

P

G

G

D

N

A

P

E

K

A

A

G

G

Q

E

K

K

L

I

F

F

N

K

R

T

I

K

C

C

G

A

G

Q

C

C

H

H

Q

T

V

V

G

D

T

K

S

G

A

A

R

G

G

H

S

K

F

Q

G

G

P

P

Q

N

L

L

N

N

A

G

I

L

F

F

G

G

R

R

P

Q

A

S

G

G

S

T

T

T

T

P

D

G

Y

Y

Q

S

Y

Y

S

S

T

T

A

A

M

N

K

K

S

N

S

M

G

A

L

V

I

I

W

W

T

E

R

E

E

N

T

T

L

L

T

Y

A

D

Y

Y

I

L

E

L

A

N

P

P

K
|
K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

V

F

F

W

P

G

G

L

L

S
x
K

D

K

P

P

Q

Q

K

E

I

R

E

A

N

D

L

L

L

I

A

S

Y

Y

L

L

Q

K

M1 (≠ L17) modified: Initiator methionine, Removed
A2 (≠ F18) modified: N-acetylalanine
K81 (= K97) modified: N6,N6,N6-trimethyllysine
K95 (≠ S111) modified: N6,N6,N6-trimethyllysine

1ccrA Structure of rice ferricytochromE C at 2.0 angstroms resolution (see paper)
42% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of 1ccrA

query
sites
1ccrA

S

S

M

F

Q

S

A

E

E

A

A

P

A

P

G

G

D

N

A

P

E

K

A

A

G

G

Q

E

K

K

L

I

F

F

N

K

R

T

I
x
K

C
|
C

G

A

G

Q

C
|
C

H
|
H

Q

T

V

V

G

D

T

K

S

G

A

A

R

G

G

H

S

K

F
x
Q

G
|
G

P
|
P

Q

N

L

L

N

N

A

G

I

L

F

F

G

G

R

R

P

Q

A
x
S

G

G

S

T

T

T

T

P

D

G

Y
|
Y

Q

S

Y
|
Y

S
|
S

T

T

A

A

M
x
D

K

K

S

N

S

M

G

A

L

V

I

I

W
|
W

T

E

R

E

E

N

T

T

L

L

T

Y

A

D

Y
|
Y

I

L

E

L

A

N

P

P

K

K

E

K

V

Y

V

I

P

P

G

G

T
|
T

R
x
K

M
|
M

I

V

F
|
F

W

P

G

G

L

L

S

K

D

K

P

P

Q

Q

K

E

I

R

E

A

N

D

L

L

L

I

A

S

Y

Y

L

L

Q

K

binding heme c: K21 (≠ I38), C22 (= C39), C25 (= C42), H26 (= H43), Q36 (≠ F53), G37 (= G54), P38 (= P55), S48 (≠ A65), Y54 (= Y71), Y56 (= Y73), S57 (= S74), D60 (≠ M77), W67 (= W84), Y75 (= Y92), T86 (= T103), K87 (≠ R104), M88 (= M105), F90 (= F107)

P00059 Cytochrome c from Abutilon theophrasti (Velvet-leaf) (Sida abutilon) (see paper)
43% identity, 82% coverage: 19:124/129 of query aligns to 2:107/111 of P00059

query
sites
P00059

S

S

M

F

Q

Q

A

Z

E

A

A

P

A

P

G

G

D

B

A

A

E

K

A

A

G

G

Q

E

K

K

L

I

F

F

N

K

R

T

I

K

C
|
C

G

A

G

Q

C
|
C

H

H

Q

T

V

V

G

E

T

K

S

G

A

A

R

G

G

H

S

K

F

Q

G

G

P

P

Q

N

L

L

N

N

A

G

I

L

F

F

G

G

R

R

P

Q

A

S

G

G

S

T

T

T

T

P

D

G

Y

Y

Q

S

Y

Y

S

S

T

A

A

A

M

N

K

K

S

N

S

M

G

A

L

V

I

N

W

W

T

G

R

E

E

N

T

T

L

L

T

Y

A

D

Y

Y

I

L

E

L

A

N

P

P

K
|
K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

V

F

F

W

P

G

G

L

L

S
x
K

D

K

P

P

Q

Q

K

D

I

R

E

A

N

D

L

L

L

I

A

A

Y

Y

L

L

Q

K

C22 (= C39) binding covalent
C25 (= C42) binding covalent
K80 (= K97) modified: N6,N6,N6-trimethyllysine
K94 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: N-acetylalanine

P00027 Cytochrome c from Squalus suckleyi (Puget Sound dogfish) (Spinax suckleyi) (see paper)
42% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P00027

query
sites
P00027

G
|
G

D

D

A

V

E

E

A

K

G

G

Q

K

K

K

L

V

F

F

N

V

R

Q

I

K

C
|
C

G

A

G

Q

C
|
C

H

H

Q

T

V

V

G

E

T

N

S

G

A

G

R

K

G

H

S

K

F

T

G

G

P

P

Q

N

L

L

N

S

A

G

I

L

F

F

G

G

R

R

P

K

A

T

G

G

S

Q

T

A

T

Q

D

G

Y

F

Q

S

Y

Y

S

T

T

D

A

A

M

N

K

K

S

S

S

K

G

G

L

I

I

T

W

W

T

Q

R

Q

E

E

T

T

L

L

T

R

A

I

Y

Y

I

L

E

E

A

N

P

P

K

K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

I

F

F

W

A

G

G

L

L

S

K

D

K

P

K

Q

S

K

E

I

R

E

Q

N

D

L

L

L

I

A

A

Y

Y

L

L

Q

K

G2 (= G26) modified: N-acetylglycine
C15 (= C39) binding covalent
C18 (= C42) binding covalent

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P00028 Cytochrome c from Entosphenus tridentatus (Pacific lamprey) (Lampetra tridentata) (see paper)
41% identity, 77% coverage: 26:124/129 of query aligns to 2:100/105 of P00028

query
sites
P00028

G
|
G

D

D

A

V

E

E

A

K

G

G

Q

K

K

K

L

V

F

F

N

V

R

Q

I

K

C
|
C

G

S

G

Q

C
|
C

H

H

Q

T

V

V

G

E

T

K

S

A

A

G

R

K

G

H

S

K

F

T

G

G

P

P

Q

N

L

L

N

S

A

G

I

L

F

F

G

G

R

R

P

K

A

T

G

G

S

Q

T

A

T

P

D

G

Y

F

Q

S

Y

Y

S

T

T

D

A

A

M

N

K

K

S

S

S

K

G

G

L

I

I

V

W

W

T

N

R

Q

E

E

T

T

L

L

T

F

A

V

Y

Y

I

L

E

E

A

N

P

P

K

K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

I

F

F

W

A

G

G

L

I

S

K

D

K

P

E

Q

G

K

E

I

R

E

K

N

D

L

L

L

I

A

A

Y

Y

L

L

Q

K

G2 (= G26) modified: N-acetylglycine
C15 (= C39) binding covalent
C18 (= C42) binding covalent

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P00070 Cytochrome c from Helianthus annuus (Common sunflower) (see paper)
45% identity, 81% coverage: 22:125/129 of query aligns to 5:109/112 of P00070

query
sites
P00070

A

A

E

E

A

A

-

P

A

A

G

G

D

N

A

P

E

T

A

T

G

G

Q

E

K

K

L

I

F

F

N

K

R

T

I

K

C
|
C

G

A

G

Q

C
|
C

H

H

Q

T

V

V

G

E

T

K

S

G

A

A

R

G

G

H

S

K

F

Q

G

G

P

P

Q

N

L

L

N

N

A

G

I

L

F

F

G

G

R

R

P

Q

A

S

G

G

S

T

T

T

T

A

D

G

Y

Y

Q

S

Y

Y

S

S

T

A

A

G

M

N

K

K

S

N

S

K

G

A

L

V

I

I

W

W

T

E

R

E

E

N

T

T

L

L

T

Y

A

D

Y

Y

I

L

E

L

A

N

P

P

K
|
K

E

K

V

Y

V

I

P

P

G

G

T

T

R

K

M

M

I

V

F

F

W

P

G

G

L

L

S
x
K

D

K

P

P

Q

Q

K

E

I

R

E

A

N

D

L

L

L

I

A

A

Y

Y

L

L

Q

K

T

T

C23 (= C39) binding covalent
C26 (= C42) binding covalent
K81 (= K97) modified: N6,N6,N6-trimethyllysine
K95 (≠ S111) modified: N6,N6,N6-trimethyllysine

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylalanine

Query Sequence

>Pf1N1B4_4109 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4109
MKNAAVLTFALMLNTGLFSMQAEAAGDAEAGQKLFNRICGGCHQVGTSARGSFGPQLNAI
FGRPAGSTTDYQYSTAMKSSGLIWTRETLTAYIEAPKEVVPGTRMIFWGLSDPQKIENLL
AYLQTFQPQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory