Comparing Pf1N1B4_4264 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4264 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
3dmeA Crystal structure of conserved exported protein from bordetella pertussis. Northeast structural genomics target ber141
63% identity, 91% coverage: 30:394/399 of query aligns to 1:366/366 of 3dmeA
8w78A Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase in complex with fad and 2-oxoglutarate (see paper)
30% identity, 80% coverage: 71:389/399 of query aligns to 44:399/410 of 8w78A
Sites not aligning to the query:
8w7fB Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase bound with fad and a sulfate ion (see paper)
30% identity, 80% coverage: 71:389/399 of query aligns to 44:401/412 of 8w7fB
Sites not aligning to the query:
4x9mA Oxidized l-alpha-glycerophosphate oxidase from mycoplasma pneumoniae with fad bound (see paper)
26% identity, 90% coverage: 33:393/399 of query aligns to 5:365/384 of 4x9mA
P75063 Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (Mycoplasmoides pneumoniae) (see paper)
26% identity, 90% coverage: 33:393/399 of query aligns to 5:365/384 of P75063
>Pf1N1B4_4264 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4264
MQSSWLVIFFSLIDYRERGLAGMGGGQVSVDIECVVVGAGVVGLAVARALARIGREVILV
EAGEGIGVGISSRNSEVIHAGIYYPSGSLKAQLCVEGRQRLYAFCDERGVDYRRIGKLIV
ATDDRQRHALQALLEQGRRNGVDDLQWLDAGQAQALEPALSCVAALWSPSTGIVDSHALM
LALQADAEACGTSIAFHTPLESARCTEHGFELHLGGAQPMPLSCRQLINCAGLSAPDVAS
RIEGLPAQHVPKAWLCKGSYFSFSGRAPFRHLVYPAPESAGLGVHMTLDLGGQARFGPDV
EWVEQVDYRVDPRRSVSFYQAIRRYWPALPDNSLQPAYSGIRPKISGPTGPAADFVISAP
DVHGVPGLVNLFGIESPGLTSCLALADRVVKILAAPHSS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory