Comparing Pf1N1B4_4328 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4328 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
35% identity, 89% coverage: 42:372/374 of query aligns to 5:358/360 of 6nicD
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
34% identity, 89% coverage: 42:372/374 of query aligns to 15:372/374 of G7JT50
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
33% identity, 89% coverage: 42:372/374 of query aligns to 15:365/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
32% identity, 89% coverage: 42:372/374 of query aligns to 15:372/383 of Q8GWW7
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
30% identity, 93% coverage: 25:373/374 of query aligns to 6:364/365 of Q837U5
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
25% identity, 86% coverage: 45:365/374 of query aligns to 15:322/333 of 6b2wA
Sites not aligning to the query:
4ytbA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) in complex with dipeptide asp-gln. (see paper)
22% identity, 70% coverage: 106:368/374 of query aligns to 71:310/422 of 4ytbA
4ytgA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) mutant c351a in complex with dipeptide met-arg. (see paper)
22% identity, 66% coverage: 106:350/374 of query aligns to 71:290/417 of 4ytgA
Sites not aligning to the query:
6i0xB Porphyromonas gingivalis peptidylarginine deminase (ppad) mutant g231n/e232t/n235d in complex with cl-amidine. (see paper)
22% identity, 70% coverage: 106:368/374 of query aligns to 71:310/422 of 6i0xB
>Pf1N1B4_4328 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4328
MSTRREFIKHVSVVAGLGAAVSIGLGLTPLNAGAATQGVWRMPDEGDKHRRAFVAFGAQE
AIWEDFTPDVQEAIGLIARTIAHYEPVTVFCRSNERGLAEEHCGTTNITYVTTELDDVWM
RDIGANFVIDGAGGLGAVDFNFNGWGNKQQYSKDAQVAALVADTVDADHIRSELVGEGGG
IEVDGHGTGIMTESSWINSNRNPDWSKAEVEQELKARLGLRKIIWLPGIKGKDITDAHVD
FYARFVKPGVVIANLDNDPESYDRKVTLAHLEILKQATDADGRKLQVHTVSPPLNPRKSK
FSRNNPDFAAGYINYFVINGAIIAPEFGDKAADTRAFDLLSELYPDREVVQLNIDAIAAG
GGGIHCVTSHQPQA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory