SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf1N1B4_4350 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4350 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
30% identity, 52% coverage: 62:213/294 of query aligns to 87:236/296 of P68183

query
sites
P68183
R
 
N
S
 
S
L
 
V
E
 
K
I
 
V
A
 
A
C
 
G
Y
 
I
T
 
S
A
 
A
I
 
I
A
 
G
A
 
I
V
 
V
A
 
A
L
 
L
G
 
S
T
 
T
L
 
T
A
 
C
A
 
A
F
 
Y
V
 
A
L
 
F
T
 
A
R
 
R
V
 
M
T
 
-
R
 
R
F
 
F
K
 
P
G
 
G
R
 
K
-
 
A
T
 
T
L
 
L
F
 
L
G
 
K
G
 
G
L
 
M
V
 
L
T
 
I
A
 
F
P
 
Q
L
 
M
V
 
-
M
 
F
P
 
P
E
 
A
V
 
V
I
 
L
T
 
S
G
 
L
L
 
V
S
 
A
L
 
L
L
 
Y
L
 
A
L
 
L
F
 
F
V
 
D
A
 
R
M
 
L
A
 
G
Q
 
E
L
 
Y
I
 
I
G
 
P
W
 
F
P
 
-
Q
 
-
E
 
-
R
 
I
G
 
G
L
 
L
V
 
N
T
 
T
I
 
-
W
 
-
I
 
-
A
 
-
H
 
H
T
 
G
T
 
G
F
 
V
C
 
I
A
 
F
A
 
A
Y
 
Y
V
 
L
A
 
G
V
 
G
V
 
I
-
 
A
-
 
L
-
 
H
-
 
V
-
 
W
-
 
T
V
 
I
S
 
K
A
 
G
R
 
Y
L
 
F
R
 
E
E
 
T
L
 
I
D
 
D
L
 
S
S
 
S
I
 
L
E
 
E
E
|
E
A
 
A
A
|
A
M
 
A
D
 
L
L
 
D
G
|
G
A
 
A
R
 
T
P
 
P
F
 
W
K
 
Q
V
 
A
F
 
F
F
 
R
L
 
L
I
 
V
T
 
L
I
 
L
P
|
P
M
 
L
I
 
S
A
 
V
P
 
P
S
 
I
L
 
L
A
 
A
A
 
V
G
 
V
G
 
F
M
 
I
M
 
L
S
 
S
F
 
F
A
 
I
L
 
A
S
 
A
L
 
I
D
 
T
D
 
E
L
 
V
V
 
P
L
 
V
A
 
A
S
 
S
F
 
L
V
 
L

8hpsB ABC transporter, permease protein SugB (see paper)
24% identity, 54% coverage: 47:206/294 of query aligns to 52:204/264 of 8hpsB

query
sites
8hpsB
Y
 
Y
V
 
K
G
 
A
L
 
I
L
 
F
D
 
S
N
 
G
T
 
D
Q
 
A
L
 
F
M
 
T
G
 
S
S
 
A
V
 
L
V
 
F
R
 
N
S
 
S
L
 
I
E
 
G
I
 
I
A
 
G
C
 
L
Y
 
I
T
 
T
A
 
T
I
 
I
A
 
I
A
 
A
V
 
V
A
 
V
L
 
I
G
 
G
T
 
G
L
 
M
A
 
A
A
 
A
F
 
Y
V
 
A
L
 
V
T
 
A
R
 
R
V
 
L
T
 
-
R
 
Q
F
 
F
K
 
P
G
 
G
R
 
K
T
 
Q
L
 
L
F
 
L
G
 
I
G
 
G
L
 
V
V
 
A
T
 
L
A
 
L
P
 
I
L
 
A
V
 
M
M
 
F
P
 
P
E
x
H
V
 
I
I
 
S
T
 
L
G
 
V
L
 
T
S
 
P
L
 
I
L
 
F
L
 
N
L
 
M
F
 
W
V
 
R
A
 
G
M
 
I
A
 
G
Q
 
L
L
 
F
I
 
D
G
 
T
W
 
W
P
 
P
Q
 
-
E
 
-
R
 
-
G
 
G
L
 
L
V
 
I
T
 
-
I
 
-
W
 
-
I
 
I
A
 
P
H
 
Y
T
 
I
T
 
T
F
 
F
C
 
A
A
 
L
A
 
P
Y
 
L
V
 
A
A
 
I
V
 
Y
V
 
T
V
 
L
S
 
S
A
 
A
R
 
F
L
 
F
R
 
R
E
 
E
L
 
I
D
 
P
L
 
W
S
 
D
I
 
L
E
 
E
E
 
K
A
 
A
A
 
A
M
 
K
D
 
M
L
 
D
G
 
G
A
 
A
R
 
T
P
 
P
F
 
A
K
 
Q
V
 
A
F
 
F
F
 
R
L
 
K
I
 
V
T
 
I
I
 
A
P
 
P
M
 
L
I
 
A
A
 
A
P
 
P
S
 
G
L
 
I
A
 
V
A
 
T
G
 
A
G
 
A
M
 
I
M
 
L
S
 
V
F
 
F
A
 
I
L
x
F
S
 
A
L
 
W
D
 
N
D
 
D

Query Sequence

>Pf1N1B4_4350 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4350
MKRFGFSKFMLIFGLSFIYLPMLILVIYSFNASKLVTVWGGWSVKWYVGLLDNTQLMGSV
VRSLEIACYTAIAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLF
VAMAQLIGWPQERGLVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPFKVF
FLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAV
ASLILLAVSLVTFMVWYFSRKAEATRKRAIQEAMDQTASESWQQPKNQRVEATA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory