Comparing Pf1N1B4_4356 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4356 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
21% identity, 83% coverage: 35:393/432 of query aligns to 3:349/363 of 7cyxA
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
21% identity, 78% coverage: 52:388/432 of query aligns to 23:351/374 of 1y56B
Sites not aligning to the query:
>Pf1N1B4_4356 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4356
MKQDSVKQKHVNSYYAATRNFTGDFPVLEQAVDCDVCVIGAGYTGLSSALFLSEAGYSVT
VLEAAKVGFGASGRNGGQLVNSYSRDVDVIEERYGDKTAEVLGSMIFEGADIIRSRIKEY
DIQCDYRPGGIFAALNKKQLNGLAEQKSSWERYGNKNLRMLDAADIKREVGCDNYVGGLL
DMQGGHIHPLNLALGEAAAIIRLGGKIYEQSAAVEITYGEPITVRTAKGVVRAKYLLIAG
NAYLPQDLDNRVTRKSMPCGSQIVVTEPLSEKVARSLIANNYCVEDCNYLLDYYRLTADN
RLLYGGGVVYGAREPDDIEQLIRPKILKTFPQLKDVKIDYRWTGNFLLTMSRMPQFGRIE
KNAYYMQGYSGHGVTCSHLAGKLISEMIRGDAERFDAFASLPHMPMLGGRTFQAPLTAMG
AAYYALRDRFGI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory