Comparing Pf1N1B4_4398 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4398 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
34% identity, 96% coverage: 1:222/232 of query aligns to 1:213/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
34% identity, 96% coverage: 1:222/232 of query aligns to 1:213/215 of 4ymtC
>Pf1N1B4_4398 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4398
MILDYNLIWENLPLYFNGALLTLKVLFISLALGLVLAIPLALMRVSRSPLINFPAWLYTY
VIRGTPMLVQLFLIYYGLAQFEAVRQSVLWPYLSSATFCACLAFAINTSAYSAELLAGSL
KSTPHGEIEAAKAMGMSRLTLYRRILMPSALRRALPQYSNEVLMMLQTTSLASIVTLVDI
TGAARTVSSRFYLPFEAFITAGLIYLALTFILVRLFKLAERHWLAYLAPRKY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory