Comparing Pf1N1B4_4626 3-carboxymuconate cyclase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
27% identity, 82% coverage: 39:370/405 of query aligns to 11:311/331 of P52697
Q72U69 Antigen Lp49; Leptospiral 49 kilodalton protein; Lp49 from Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (see paper)
26% identity, 33% coverage: 232:365/405 of query aligns to 324:455/456 of Q72U69
1jofB Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme (see paper)
22% identity, 58% coverage: 28:262/405 of query aligns to 3:220/365 of 1jofB
Sites not aligning to the query:
>Pf1N1B4_4626 3-carboxymuconate cyclase
MRMRNFWPLLMAGSVGAMGVQAAPVDSYELLVGSYTAGQSQGIYRLNFDSRTGQIDAKPL
QVVKSANPSWLVVSKDQHRLFAVNENGPGQADPVGRVSSYAIDPKTNELSLISQVQTLGN
EPTHSSVSGDASHVFVSNYSVAEDPGGTLAVLPVGTDGKLKPVVQMSSHPSSRVNPERQK
SAHVHSVVSSPDGQYVFSNDLGADKIFVYRFDPKANPELPLTAAKPASVQLPPGSGPRHL
LFSADGKHAWLTMEMSAQVAVFDYRDGKLEQTQLVDLAAGLPTSGKAAAALHASADGKFL
YVSNRGTTNQLLVFAIDPATGNLKELQRRSVDGDHPREFSLDPSGKFVLIANQKSNQIVV
VERDAKTGLLGKTVQKTTDGCPERSQVPGASIDRRPRLMGPATFY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory