Comparing Pf1N1B4_4793 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4793 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
25% identity, 92% coverage: 2:110/119 of query aligns to 105:213/215 of 4ymtC
Sites not aligning to the query:
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
25% identity, 92% coverage: 2:110/119 of query aligns to 105:213/214 of 4ymwC
Sites not aligning to the query:
>Pf1N1B4_4793 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4793
VEIFAGAIRSIPYGEIEAAHAYGLSGWRLYLRLILPSALRRALPYYSNEVILMLHATSVA
FTATIPDILKVARDANAATFMTFQAFGIAGLLYLALSFGLVGAFRLAEKRWLSFLGPAH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory