Comparing Pf1N1B4_4805 ABC transporter permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
39% identity, 72% coverage: 75:283/292 of query aligns to 18:213/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
39% identity, 72% coverage: 75:283/292 of query aligns to 18:213/214 of 4ymwC
>Pf1N1B4_4805 ABC transporter permease protein
MSQTQAERLQAERKLAENQFDITQYQHVPRRYYGRIFFATVIVIAIVGLVRAFAEGKIEW
SYIGQFLTSQAIMWGLLNTIVMAVLAMALGIVFGVITAIMRMSANPILRYVALTYTWLFR
GTPLILQLLLWFNLALIFPTIGIPGLFEMDTVSLMTPFAAALLGLSINQGAYTAEVVRAG
LLSVDTGQYEAAKSIGMPRLQALRRIILPQAMRIIIPPVGNEFIGMVKMTSLASVIQYSE
LLYNAQNIYYANARVMELLIVAGIWYLATVTVLSFGQSRLERRFARGAGKRS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory