SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf1N1B4_5 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

1lbmA Crystal structure of phosphoribosyl anthranilate isomerase (prai) in complex with reduced 1-(o-carboxyphenylamino)-1-deoxyribulose 5- phosphate (rcdrp) (see paper)
60% identity, 98% coverage: 1:45/46 of query aligns to 149:193/194 of 1lbmA

query
sites
1lbmA
L
 
L
T
 
N
P
 
P
D
 
E
N
 
N
V
 
V
A
 
R
E
 
S
A
 
A
I
 
I
A
 
D
R
 
V
V
 
V
R
 
R
P
 
P
Y
 
F
A
 
A
V
 
V
D
|
D
V
 
V
S
|
S
G
x
S
G
 
G
V
 
V
E
 
E
A
 
A
S
 
F
K
 
P
G
 
G
I
 
K
K
 
K
D
 
D
H
 
H
A
 
D
R
 
S
I
 
I
Q
 
K
A
 
M
F
 
F
I
 
I
K
 
K
A
 
N
V
 
A
V
 
K
G
 
G

Sites not aligning to the query:

1nsjA Crystal structure of phosphoribosyl anthranilate isomerase from thermotoga maritima (see paper)
60% identity, 98% coverage: 1:45/46 of query aligns to 160:204/205 of 1nsjA

query
sites
1nsjA
L
 
L
T
 
N
P
 
P
D
 
E
N
 
N
V
 
V
A
 
R
E
 
S
A
 
A
I
 
I
A
 
D
R
 
V
V
 
V
R
 
R
P
 
P
Y
 
F
A
 
A
V
 
V
D
 
D
V
|
V
S
|
S
G
x
S
G
 
G
V
 
V
E
 
E
A
 
A
S
 
F
K
 
P
G
 
G
I
 
K
K
 
K
D
 
D
H
 
H
A
 
D
R
 
S
I
 
I
Q
 
K
A
 
M
F
 
F
I
 
I
K
 
K
A
 
N
V
 
A
V
 
K
G
 
G

Sites not aligning to the query:

Query Sequence

>Pf1N1B4_5 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5
LTPDNVAEAIARVRPYAVDVSGGVEASKGIKDHARIQAFIKAVVGA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory