Comparing Pf1N1B4_5038 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5038 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ryaA Crystal structure of abc transporter solute binding protein avi_3567 from agrobacterium vitis s4, target efi-510645, with bound d-mannitol
61% identity, 95% coverage: 23:436/436 of query aligns to 1:417/417 of 4ryaA
5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
27% identity, 92% coverage: 25:427/436 of query aligns to 7:397/399 of 5iaiA
1eu8A Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
26% identity, 89% coverage: 46:431/436 of query aligns to 27:407/407 of 1eu8A
Sites not aligning to the query:
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
26% identity, 89% coverage: 46:431/436 of query aligns to 68:448/450 of Q7LYW7
Sites not aligning to the query:
6dtqA Maltose bound t. Maritima male3 (see paper)
25% identity, 88% coverage: 39:420/436 of query aligns to 18:382/391 of 6dtqA
Sites not aligning to the query:
5ci5A Crystal structure of an abc transporter solute binding protein from thermotoga lettingae tmo (tlet_1705, target efi-510544) bound with alpha-d-tagatose
22% identity, 88% coverage: 44:427/436 of query aligns to 24:389/393 of 5ci5A
Sites not aligning to the query:
7qhvAAA Sulfoquinovosyl binding protein (see paper)
25% identity, 66% coverage: 46:332/436 of query aligns to 24:305/390 of 7qhvAAA
Sites not aligning to the query:
7yzuA Crystal structure of the sulfoquinovosyl binding protein smof complexed with sqme (see paper)
25% identity, 66% coverage: 46:332/436 of query aligns to 22:302/382 of 7yzuA
Sites not aligning to the query:
A9CEY9 Sulfoquinovosyl glycerol-binding protein SmoF; SQGro-binding protein SmoF; SQ monooxygenase cluster protein F from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see 2 papers)
23% identity, 76% coverage: 1:332/436 of query aligns to 3:335/416 of A9CEY9
Sites not aligning to the query:
7yzsAAA Sulfoquinovosyl binding protein (see paper)
25% identity, 66% coverage: 46:332/436 of query aligns to 23:305/384 of 7yzsAAA
Sites not aligning to the query:
7ofyA Crystal structure of sq binding protein from agrobacterium tumefaciens in complex with sulfoquinovosyl glycerol (sqgro) (see paper)
25% identity, 66% coverage: 46:332/436 of query aligns to 25:307/389 of 7ofyA
Sites not aligning to the query:
5ysdB Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotriose (see paper)
23% identity, 84% coverage: 66:431/436 of query aligns to 42:381/389 of 5ysdB
Sites not aligning to the query:
5ysbA Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form (see paper)
23% identity, 84% coverage: 66:431/436 of query aligns to 41:380/386 of 5ysbA
Sites not aligning to the query:
5ysdA Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotriose (see paper)
23% identity, 84% coverage: 66:431/436 of query aligns to 42:381/387 of 5ysdA
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
25% identity, 68% coverage: 25:319/436 of query aligns to 5:310/406 of 7ehqA
Sites not aligning to the query:
2i58A Crystal structure of rafe from streptococcus pneumoniae complexed with raffinose
25% identity, 72% coverage: 25:336/436 of query aligns to 2:313/385 of 2i58A
Sites not aligning to the query:
6preA Sbp rafe in complex with verbascose (see paper)
25% identity, 72% coverage: 25:336/436 of query aligns to 3:314/386 of 6preA
Sites not aligning to the query:
6jamA Crystal structure of abc transporter alpha-glycoside-binding mutant protein r356a in complex with trehalose (see paper)
23% identity, 74% coverage: 110:430/436 of query aligns to 92:402/406 of 6jamA
Sites not aligning to the query:
6jahA Crystal structure of abc transporter alpha-glycoside-binding protein in complex with glucose (see paper)
23% identity, 74% coverage: 110:430/436 of query aligns to 90:400/404 of 6jahA
Sites not aligning to the query:
6jagA Crystal structure of abc transporter alpha-glycoside-binding protein in complex with sucrose (see paper)
23% identity, 74% coverage: 110:430/436 of query aligns to 90:400/404 of 6jagA
Sites not aligning to the query:
>Pf1N1B4_5038 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5038
MKIIPSAFFLSAGLSSALLCQAAETVTIATVNNSDMIRMQRLSKTFEQQHPDVKLNWVVL
EENVLRQRLTTDIATQGGQFDVLTIGTYETPLWGAKHWLEPMKDLPASYDLEDIFPSVRQ
GLSVNDTLYALPFYGESTITYYRTDLFKNAGLSMPEHPTWTQLGEFAGKLHQPDKEQYGM
CLRGKAGWGENMALLTTMSNAFGARWFNEQWQPQLTGPEWTAAANFYVNTLKQYGPPGVS
SNGFNETLALFNSGKCAIWVDASVAGSFITDTTQSKVADKVGFVAAPTQVTDKGSSWLYA
WSLAIPATSKHKEAAKAFVTWATSKDYIQLVADKDGITNVPPGTRMSTYSNAYLQAAPFA
SVTLKMMQHADPAHPSVQPVPYVGIQYVTIPEFQAIGTSVGKLLSAALTGQMPVEQALAS
AQQTTEREMKRAGYPK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory