Comparing Pf1N1B4_5105 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5105 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
37% identity, 93% coverage: 1:299/323 of query aligns to 1:305/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
36% identity, 89% coverage: 28:314/323 of query aligns to 21:313/326 of Q8RDH4
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 89% coverage: 28:314/323 of query aligns to 20:302/310 of 4fwiB
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 73% coverage: 28:262/323 of query aligns to 18:248/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 73% coverage: 28:262/323 of query aligns to 19:249/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 73% coverage: 28:262/323 of query aligns to 19:249/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 73% coverage: 28:262/323 of query aligns to 19:249/344 of 3tuiC
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
34% identity, 72% coverage: 28:258/323 of query aligns to 16:241/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
34% identity, 72% coverage: 28:258/323 of query aligns to 16:241/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
34% identity, 72% coverage: 28:258/323 of query aligns to 16:241/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
34% identity, 72% coverage: 28:258/323 of query aligns to 16:241/242 of 2oljA
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 70% coverage: 34:258/323 of query aligns to 36:251/378 of P69874
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 79% coverage: 3:258/323 of query aligns to 3:247/253 of 7z15I
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 79% coverage: 3:258/323 of query aligns to 2:239/241 of 4u00A
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 79% coverage: 3:258/323 of query aligns to 3:247/250 of 7z18I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
35% identity, 79% coverage: 3:258/323 of query aligns to 3:247/250 of 7z16I
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 73% coverage: 24:258/323 of query aligns to 10:239/240 of 4ymuJ
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 72% coverage: 30:260/323 of query aligns to 41:268/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 72% coverage: 30:260/323 of query aligns to 41:268/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
36% identity, 68% coverage: 30:250/323 of query aligns to 41:258/260 of 7ahdC
Sites not aligning to the query:
>Pf1N1B4_5105 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5105
MTLLKVKDLHVRFAAPGTGLMGMNRQWLTAVNGVSLTLSAGETLGLVGESGSGKSSLGRA
ILHLNEIYAGQVLFDGIDMAHAGKVDITRLRHETAMVFQDPYAALNPRLSIGQTLAEVLR
VQRKVPESLIAARVGELLTLVGLRPELASRKPHALSGGQCQRVGIARALAVEPRLIVADE
CVAALDVSIQGQIINLLLELRQRMNLAIVFIAHDLAIVRRLCDRVAVMYLGKIVEEGPVE
EVFRSPRHPYTAALIQSIPEIDPARALPTDPLPGEPPSPLQLPSGCAFHPRCRYVRATCS
QVVPPTRQLDARRYDCVLEEPLF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory