Comparing Pf1N1B4_54 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_54 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
36% identity, 88% coverage: 27:257/263 of query aligns to 1:228/229 of 5t0wA
5kkwA Crystal structure of sar11_1068 bound to a sulfobetaine (3-(1- methylpiperidinium-1-yl)propane-1-sulfonate)
32% identity, 87% coverage: 27:256/263 of query aligns to 2:231/237 of 5kkwA
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
31% identity, 85% coverage: 35:258/263 of query aligns to 3:224/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
31% identity, 85% coverage: 35:258/263 of query aligns to 3:226/226 of 4zv1A
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
26% identity, 85% coverage: 35:258/263 of query aligns to 3:227/234 of 3k4uE
4h5fA Crystal structure of an amino acid abc transporter substrate-binding protein from streptococcus pneumoniae canada mdr_19a bound to l- arginine, form 1
31% identity, 89% coverage: 27:261/263 of query aligns to 2:239/240 of 4h5fA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
24% identity, 87% coverage: 29:258/263 of query aligns to 3:228/229 of 6svfA
7a99B Crystal structure of the phe57trp mutant of the arginine-bound form of domain 1 from tmargbp (see paper)
35% identity, 33% coverage: 29:116/263 of query aligns to 2:89/130 of 7a99B
Sites not aligning to the query:
5itoA Structure of the periplasmic binding protein m117n-noct from a. Tumefaciens in complex with octopine (see paper)
24% identity, 84% coverage: 37:258/263 of query aligns to 4:250/255 of 5itoA
2ylnA Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
32% identity, 33% coverage: 27:114/263 of query aligns to 5:92/240 of 2ylnA
Sites not aligning to the query:
5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid. (see paper)
24% identity, 84% coverage: 37:258/263 of query aligns to 3:249/256 of 5otcA
5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid (see paper)
24% identity, 84% coverage: 37:258/263 of query aligns to 3:249/254 of 5otaA
5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine. (see paper)
24% identity, 84% coverage: 37:258/263 of query aligns to 3:249/254 of 5ot9A
4powA Structure of the pbp noct in complex with pyronopaline (see paper)
24% identity, 84% coverage: 37:258/263 of query aligns to 3:249/254 of 4powA
5ovzA High resolution structure of the pbp noct in complex with nopaline (see paper)
24% identity, 84% coverage: 38:258/263 of query aligns to 5:250/259 of 5ovzA
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
24% identity, 84% coverage: 36:256/263 of query aligns to 1:221/224 of 4ymxA
4i62A 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
23% identity, 86% coverage: 29:253/263 of query aligns to 1:227/237 of 4i62A
5lomB Crystal structure of the pbp soca from agrobacterium tumefaciens c58 in complex with dfg at 1.5 a resolution (see paper)
24% identity, 87% coverage: 28:257/263 of query aligns to 1:231/250 of 5lomB
8gtuA Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with clidinium (see paper)
35% identity, 38% coverage: 35:133/263 of query aligns to 2:101/236 of 8gtuA
Sites not aligning to the query:
5l9oB Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine (see paper)
25% identity, 84% coverage: 38:257/263 of query aligns to 13:230/243 of 5l9oB
>Pf1N1B4_54 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_54
MKTIKSTMMLCGLLALASGVQAEQPPSHLDTVLQQGQLRVCTTGDYKPYTFKGEDGEYSG
IDIAMARSLADSLGVKVEWVQTTWKTLMPDMLAGKCDIGVGGISVTLERQKKAFFSTTLD
VDGKIPLVRCENQAQYQTIEQINQPSVRLVEPAGGTNEAFVHAFLPKAQLKLHDNVTIFQ
ELLDKKADVMITDASEALYQQKLKPGLCAVNPTQFMQYGEKAYLLPREDISWKLYVDQWL
HLAKVTGNYQKILGQWIAVPEGK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory