Comparing Pf1N1B4_597 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_597 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 7 hits to proteins with known functional sites (download)
P32140 Sulfoquinovose isomerase; SQ isomerase; Sulfoquinovose-sulfofructose isomerase; SQ-SF isomerase; EC 5.3.1.31 from Escherichia coli (strain K12) (see paper)
47% identity, 96% coverage: 10:411/419 of query aligns to 2:404/413 of P32140
7ag4D Crystal structure of active site mutant of sq isomerase (yihs-h248a) from salmonella enterica in complex with sulfofructose (sf) (see paper)
46% identity, 96% coverage: 10:411/419 of query aligns to 14:416/425 of 7ag4D
2zblA Functional annotation of salmonella enterica yihs-encoded protein (see paper)
46% identity, 96% coverage: 10:411/419 of query aligns to 2:404/416 of 2zblA
8h1lB Crystal structure of glucose-2-epimerase in complex with d-glucitol from runella slithyformis runsl_4512 (see paper)
22% identity, 84% coverage: 44:393/419 of query aligns to 41:400/423 of 8h1lB
Sites not aligning to the query:
3wkiA Crystal structure of cellobiose 2-epimerase in complex with cellobiitol (see paper)
27% identity, 53% coverage: 12:233/419 of query aligns to 13:248/407 of 3wkiA
Sites not aligning to the query:
3wkhA Crystal structure of cellobiose 2-epimerase in complex with epilactose (see paper)
27% identity, 53% coverage: 12:233/419 of query aligns to 13:248/410 of 3wkhA
Sites not aligning to the query:
3wkgA Crystal structure of cellobiose 2-epimerase in complex with glucosylmannose (see paper)
27% identity, 53% coverage: 12:233/419 of query aligns to 13:248/410 of 3wkgA
Sites not aligning to the query:
>Pf1N1B4_597 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_597
MDTFQPAFSSWLNAPAHQQWLAAEGLRLLAFAKAAKLAEGFGNLDEKGRLAANAQAETMN
TARMTHSFAMAHIQGLPGFAELVDHGIQALSGPLRDAEHGGWFATPEHRDGNTGKAAYLH
AFVALAASSAVVAQRPGAQALLDDAIHIIDSHFWSEEEGAMRESFNRDWSVEEAYRGANS
NMHATEAFLALADVTEDNRWLIRAQRIVERVIHDHAAVNDYLVVEHFDRDWQPLRDYNYD
NPADGFRPYGTTPGHGFEWARLLLHLEAARVQAGILTPGWLATDAQKLFDHNCRHGWDVD
GAPGIVYTLDWDNRAVVRHRLHWTHAEASAAASALLKRTGDEQYERWYRLFWEFCDSHFI
DRCDGSWHHELDPLNRPSADIWAGKPDLYHAWQAVLIPRLPLAPSMAIALAQLSQSVAV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory