Comparing Pf1N1B4_5996 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5996 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
B0VHH0 3-keto-5-aminohexanoate cleavage enzyme; EC 2.3.1.247 from Cloacimonas acidaminovorans (strain Evry) (see paper)
32% identity, 87% coverage: 13:316/350 of query aligns to 1:271/276 of B0VHH0
2y7dD Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (kce) from candidatus cloacamonas acidaminovorans (orthorombic form) (see paper)
32% identity, 87% coverage: 14:316/350 of query aligns to 5:274/278 of 2y7dD
2y7gA Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (kce) from c. Cloacamonas acidaminovorans in complex with the product acetoacetate (see paper)
32% identity, 87% coverage: 14:316/350 of query aligns to 3:272/276 of 2y7gA
2y7fD Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (kce) from c. Cloacamonas acidaminovorans in complex with the substrate 3- keto-5-aminohexanoate (see paper)
32% identity, 87% coverage: 14:316/350 of query aligns to 4:273/277 of 2y7fD
2y7fA Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (kce) from c. Cloacamonas acidaminovorans in complex with the substrate 3- keto-5-aminohexanoate (see paper)
32% identity, 87% coverage: 14:316/350 of query aligns to 4:273/277 of 2y7fA
3no5E Crystal structure of a pfam duf849 domain containing protein (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
25% identity, 87% coverage: 16:320/350 of query aligns to 6:275/275 of 3no5E
3chvA Crystal structure of a prokaryotic domain of unknown function (duf849) member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a resolution
25% identity, 86% coverage: 16:316/350 of query aligns to 5:270/279 of 3chvA
Sites not aligning to the query:
3lotD Crystal structure of protein of unknown function (np_070038.1) from archaeoglobus fulgidus at 1.89 a resolution
26% identity, 86% coverage: 16:316/350 of query aligns to 7:302/313 of 3lotD
3e02A Crystal structure of a duf849 family protein (bxe_c0271) from burkholderia xenovorans lb400 at 1.90 a resolution
26% identity, 87% coverage: 14:318/350 of query aligns to 5:301/310 of 3e02A
3fa5A Crystal structure of a duf849 family protein (pden_3495) from paracoccus denitrificans pd1222 at 1.90 a resolution
22% identity, 86% coverage: 16:316/350 of query aligns to 4:270/276 of 3fa5A
3e49A Crystal structure of a prokaryotic domain of unknown function (duf849) with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb400 at 1.75 a resolution
25% identity, 87% coverage: 14:316/350 of query aligns to 2:296/307 of 3e49A
>Pf1N1B4_5996 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5996
MQFFDDSLHPENMEKVVITVAPYGPEWMPEDFPEDIPLTMDEQVQKAVECYEAGATVLHL
HVRELDGKGSKRLSKFNELIAGVREAVPDMIIQVGGSISFAPESDGEAAKWLSDDTRHML
AELTPKPDQVTVAINTTQMNIMELLYPEYLEGTSLANPAYQAAYSEMTVPAGPAWVAEHL
KRLMDNGIQPHFQLTGMHAMETLERLVRKGVYKGPLNLTWIGIGGGFDGPNPFNFFNFIH
RAPDGCTLTSESLLKNVMPFNTMAMAMGMHPRVGNEDTIIDHKGDRFGSVAQIKQTVRIA
HELGREIATGKEAREIYRIGVQYQSIEETLLANGMAPNRKAGQKGVPQRG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory