Comparing Pf1N1B4_6035 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_6035 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
38% identity, 85% coverage: 33:303/318 of query aligns to 1:270/287 of 5dteB
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
34% identity, 89% coverage: 37:318/318 of query aligns to 3:270/274 of 2ioyA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
32% identity, 89% coverage: 34:315/318 of query aligns to 1:265/271 of 1dbpA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
33% identity, 84% coverage: 37:303/318 of query aligns to 5:259/270 of 4zjpA
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
28% identity, 90% coverage: 34:318/318 of query aligns to 1:280/292 of 2fn8A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
33% identity, 76% coverage: 38:279/318 of query aligns to 5:247/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
33% identity, 76% coverage: 38:279/318 of query aligns to 5:247/288 of 1gudA
Sites not aligning to the query:
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
33% identity, 76% coverage: 38:279/318 of query aligns to 5:247/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
33% identity, 76% coverage: 38:279/318 of query aligns to 5:247/288 of 8wl9A
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
27% identity, 89% coverage: 36:318/318 of query aligns to 2:277/290 of 4wutA
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
29% identity, 83% coverage: 37:301/318 of query aligns to 5:260/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
29% identity, 83% coverage: 37:301/318 of query aligns to 5:260/287 of 4ry0A
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
26% identity, 88% coverage: 37:317/318 of query aligns to 4:285/313 of 2h3hA
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
26% identity, 86% coverage: 46:317/318 of query aligns to 12:285/305 of 3c6qC
Sites not aligning to the query:
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
29% identity, 89% coverage: 37:318/318 of query aligns to 7:282/295 of 4rxtA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
29% identity, 89% coverage: 36:318/318 of query aligns to 10:276/284 of 7e7mC
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
27% identity, 81% coverage: 36:294/318 of query aligns to 10:260/296 of 4irxA
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
29% identity, 89% coverage: 36:317/318 of query aligns to 7:276/287 of 4yo7A
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
26% identity, 85% coverage: 31:301/318 of query aligns to 3:265/283 of 6gt9A
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
25% identity, 83% coverage: 39:301/318 of query aligns to 6:260/278 of 6guqA
>Pf1N1B4_6035 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_6035
MKLPFAGRLLAVAMLAAASAALPVSSAFAETPEKPKVALVMKSLANEFFLTMEDGAKAYQ
KDHSGDFELISNGIKDETDTAGQTRIVEQMILSKVNALVIAPADSKAMVPVIKKAVDAGI
TVINIDNQLDPAVVKSKNITVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTN
AQQRTAGFKDAMEAAQIKVVSLQSGDWEIDKGGKVASSMLSEYPNIKALLAGNDSMAVGA
VSAVRAAGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAARQAVFGIETALKIIKGET
VDSGANGVIETPVELVTK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory