Comparing Pf1N1B4_917 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_917 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
60% identity, 92% coverage: 28:343/343 of query aligns to 7:324/324 of 4z9nB
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
31% identity, 60% coverage: 35:241/343 of query aligns to 3:201/226 of 4zv1A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
28% identity, 70% coverage: 27:265/343 of query aligns to 1:225/229 of 5t0wA
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
31% identity, 60% coverage: 35:241/343 of query aligns to 3:199/225 of 4zv2A
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
27% identity, 62% coverage: 28:239/343 of query aligns to 6:208/251 of 1xt8B
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
26% identity, 61% coverage: 29:237/343 of query aligns to 3:204/231 of 2v25A
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
26% identity, 63% coverage: 29:244/343 of query aligns to 3:206/229 of 6svfA
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
25% identity, 66% coverage: 25:250/343 of query aligns to 5:238/278 of 2ia4B
2vhaA Debp (see paper)
25% identity, 66% coverage: 25:250/343 of query aligns to 4:237/276 of 2vhaA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
25% identity, 66% coverage: 25:250/343 of query aligns to 2:235/503 of 8ovoA
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
25% identity, 63% coverage: 26:241/343 of query aligns to 1:207/247 of 2yjpA
9e2bC Structure of a solute binding protein from desulfonauticus sp. Bound to l-tryptophan
24% identity, 70% coverage: 27:265/343 of query aligns to 18:254/258 of 9e2bC
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
31% identity, 40% coverage: 23:159/343 of query aligns to 39:173/288 of 6h2tA
Sites not aligning to the query:
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
31% identity, 40% coverage: 23:159/343 of query aligns to 38:172/287 of 6h20A
Sites not aligning to the query:
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
31% identity, 40% coverage: 23:159/343 of query aligns to 38:172/287 of 6h1uA
Sites not aligning to the query:
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
25% identity, 65% coverage: 35:258/343 of query aligns to 3:216/234 of 3k4uE
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
25% identity, 57% coverage: 49:244/343 of query aligns to 26:213/243 of 5eyfB
2ylnA Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
24% identity, 52% coverage: 23:201/343 of query aligns to 1:168/240 of 2ylnA
4g4pA Crystal structure of glutamine-binding protein from enterococcus faecalis at 1.5 a (see paper)
29% identity, 44% coverage: 49:200/343 of query aligns to 27:171/235 of 4g4pA
Sites not aligning to the query:
7a99B Crystal structure of the phe57trp mutant of the arginine-bound form of domain 1 from tmargbp (see paper)
25% identity, 34% coverage: 29:145/343 of query aligns to 2:111/130 of 7a99B
>Pf1N1B4_917 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_917
MKMLKSTLAIVTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVG
IDADFCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDVLSRNSTMTSSRDAGMGLKF
PGFITYYDGIGFLANNKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFD
TSDESAKSLESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEW
LAIVRWTGYALLNAEEAGVTSKNVEAEAKSTKNPDVARMLGADGEYGKDLKLPKDWVVKI
VKQVGNYGEMFERNLGKDTPLQIDRGLNALWNAGGIQYAPPVR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory