SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf6N2E2_1003 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1003 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
34% identity, 87% coverage: 44:443/460 of query aligns to 7:425/438 of P11551

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P11551
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I

Sites not aligning to the query:

Query Sequence

>Pf6N2E2_1003 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1003
MFEVDVAKHSCRGWHPALAQDLNMAWRALMTVNTKIKVPVMNTNTKALSGLTHNHEKLSS
TRLAFIFVTSLFFMWGLSHGLLDVLNKHFQDTLHISRGQSGLVQTAYFGAYFIIALPVGL
FMERFGYKAGILAGLALFAIGALLFIPASMVGTFMPFLVALFVLACGLGCLETAANLYAA
ALGDPAKSEQRLTFAQSFNGLGAFIGPVIGGAVFFAPPIEFNGNRVDLVSVTYAALAIIV
MLMFVAFARIQLPEIRNEKSSDVLLPSAGEVSLWKKSNFTGALVAQFCNVGAYVGIGAFF
INYAIDHWQGISAQKASYLLSLGMLAYMVGRFAGTWVMRYVPARSLLILNSLVSMVLCIV
AIAGFERISIFAVAAIYLFMSVMYPTIFAMGIRGLGTQTKKAGSCLVMTLVGGAFVPLLM
GALADHFGIAAAFYVPLACFAAIAWYGLSQPPVTASIKAH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory