SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf6N2E2_1003 Fucose permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
34% identity, 87% coverage: 44:443/460 of query aligns to 7:425/438 of P11551

query
sites
P11551
N
 
Q
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T
K
 
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S
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Y
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A
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D
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I
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P
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F
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L
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L
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C
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S
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L
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F
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F
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L
W
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W
G
 
A
L
 
V
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A
H
 
N
G
 
N
L
 
L
L
 
N
D
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D
V
 
I
L
 
L
N
 
L
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P
H
 
Q
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F
Q
 
Q
D
 
Q
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A
L
 
F
H
 
T
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L
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T
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N
G
 
F
Q
 
Q
S
 
A
G
 
G
L
 
L
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I
Q
 
Q
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S
A
 
A
Y
 
F
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Y
G
 
F
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G
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Y
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F
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I
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I
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P
L
 
I
P
 
P
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A
G
 
G
L
 
I
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L
M
 
M
E
 
K
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K
F
 
L
G
 
S
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Y
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K
A
 
A
G
 
G
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I
L
 
I
A
 
T
G
 
G
L
 
L
A
 
F
L
 
L
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Y
A
 
A
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L
G
 
G
A
 
A
L
 
A
L
 
L
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F
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W
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P
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A
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A
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E
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I
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M
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N
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Y
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T
P
 
L
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F
L
 
L
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V
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G
L
 
L
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I
L
 
I
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A
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A
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G
L
 
L
G
 
G
C
 
C
L
 
L
E
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E
T
 
T
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A
A
 
A
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N
L
 
P
Y
 
F
A
 
V
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T
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V
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L
G
 
G
D
 
P
P
 
E
A
 
S
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S
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G
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H
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F
R
 
R
L
 
L
T
 
N
F
 
L
A
 
A
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Q
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T
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F
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N
G
 
S
L
 
F
G
 
G
A
 
A
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I
I
 
I
G
 
A
P
 
V
V
 
V
I
 
F
G
 
G
G
 
Q
A
 
S
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L
F
 
I
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L
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S
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N
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V
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P
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H
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Q
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S
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D
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L
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D
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K
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M
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L
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L
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L
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A
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L
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L
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P
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A
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D
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S
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D
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A
L
 
K
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Q
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G
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L
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L
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A
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L
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A
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Q
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F
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C
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A
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A
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C
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x
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H
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L
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A
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A
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Y
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A
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L
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A
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A
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L
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I
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A
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H
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G
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A
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L
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C
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S
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A
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F
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I
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L
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G
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S
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F
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M
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I
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G
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G
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M
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G
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F
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D
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A
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A
G
 
G
-
 
N
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I
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P
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A
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I
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P
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A
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C
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I
 
I

Sites not aligning to the query:

Query Sequence

>Pf6N2E2_1003 Fucose permease
MFEVDVAKHSCRGWHPALAQDLNMAWRALMTVNTKIKVPVMNTNTKALSGLTHNHEKLSS
TRLAFIFVTSLFFMWGLSHGLLDVLNKHFQDTLHISRGQSGLVQTAYFGAYFIIALPVGL
FMERFGYKAGILAGLALFAIGALLFIPASMVGTFMPFLVALFVLACGLGCLETAANLYAA
ALGDPAKSEQRLTFAQSFNGLGAFIGPVIGGAVFFAPPIEFNGNRVDLVSVTYAALAIIV
MLMFVAFARIQLPEIRNEKSSDVLLPSAGEVSLWKKSNFTGALVAQFCNVGAYVGIGAFF
INYAIDHWQGISAQKASYLLSLGMLAYMVGRFAGTWVMRYVPARSLLILNSLVSMVLCIV
AIAGFERISIFAVAAIYLFMSVMYPTIFAMGIRGLGTQTKKAGSCLVMTLVGGAFVPLLM
GALADHFGIAAAFYVPLACFAAIAWYGLSQPPVTASIKAH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory