Comparing Pf6N2E2_1015 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1015 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
40% identity, 92% coverage: 24:304/307 of query aligns to 9:283/287 of 4yo7A
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
32% identity, 91% coverage: 24:302/307 of query aligns to 3:274/274 of 2ioyA
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
35% identity, 93% coverage: 16:300/307 of query aligns to 28:306/349 of A0QYB5
4rsmA Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
35% identity, 91% coverage: 23:300/307 of query aligns to 4:274/315 of 4rsmA
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
34% identity, 91% coverage: 23:300/307 of query aligns to 3:273/314 of 5hkoA
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
34% identity, 91% coverage: 23:300/307 of query aligns to 36:306/349 of A0QYB3
4rs3A Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
34% identity, 91% coverage: 23:300/307 of query aligns to 3:273/315 of 4rs3A
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
32% identity, 93% coverage: 21:304/307 of query aligns to 8:282/284 of 7e7mC
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
29% identity, 90% coverage: 24:298/307 of query aligns to 5:270/270 of 4zjpA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
36% identity, 69% coverage: 71:283/307 of query aligns to 53:266/287 of 5dteB
Sites not aligning to the query:
8fxuA Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
31% identity, 92% coverage: 22:303/307 of query aligns to 4:308/310 of 8fxuA
5ocpA The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
31% identity, 83% coverage: 24:278/307 of query aligns to 3:260/302 of 5ocpA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
26% identity, 90% coverage: 24:298/307 of query aligns to 4:270/271 of 1dbpA
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
33% identity, 64% coverage: 52:246/307 of query aligns to 53:251/318 of P39325
Sites not aligning to the query:
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
33% identity, 64% coverage: 52:246/307 of query aligns to 31:229/296 of 2vk2A
Sites not aligning to the query:
5kwsA Crystal structure of galactose binding protein from yersinia pestis in the complex with beta d glucose
30% identity, 93% coverage: 20:304/307 of query aligns to 1:306/307 of 5kwsA
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 4 papers)
32% identity, 99% coverage: 1:304/307 of query aligns to 1:329/332 of P0AEE5
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
27% identity, 91% coverage: 22:300/307 of query aligns to 2:275/301 of 2x7xA
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
31% identity, 99% coverage: 1:304/307 of query aligns to 1:329/332 of P23905
2gbpA Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
32% identity, 93% coverage: 20:304/307 of query aligns to 1:306/309 of 2gbpA
>Pf6N2E2_1015 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1015
MKKRLLTYLFVALFAPLALADIRIGVSIAQVDDVFLAQMRDYMAAHAKDLPGVNLQFEDA
QGDVVRQLNQVQNFTAQGMDAIIVNPVDTAATQKMTAHAQKASVPLVYVNRRPDQAELPP
GVGYVGSDEIKAGEMQMRYLAEKMGGKGNLAIMLGLLSNNATHNRTQGVKEVLKSYPDIH
VVEEQSAEWQRSKAMDLMNNWILSGKKIDAVAANADEMAIGAAMAINQAGMRSGKDILVG
GSDGGPAGLDAIKKDQLLVTVYQDNKGQAIGSIDLALKMIRKEPFAAELTIPYQLITKAN
YQDFLNP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory