Comparing Pf6N2E2_1318 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1318 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
5i39A High resolution structure of l-amino acid deaminase from proteus vulgaris with the deletion of the specific insertion sequence (see paper)
24% identity, 82% coverage: 29:384/432 of query aligns to 25:364/383 of 5i39A
>Pf6N2E2_1318 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1318
MINIETPTYYTATKKYNLSFPTLEQDVDADVVVIGGGFSGINTALELAEKGITNIVVLEA
RYLGFGGTGRNGGQIMAGIGHDLEKIKKDVGEDGLRQIFEISDLGADIIKDRIAKYAIDA
DFCHGYGYMGFNARQEKTLRAWEKDFKSVNSKHEIRFLGGSDVQQIIGSKAYGSALLHMG
GGHVHSLNLLLGEAKALVSHGVRIFENSPALEVSYGERITVRTGRGSVRASKLLWACDSF
LNKLEPELHRSTINTYAFQMMTEPLSDELIQRISPIRGAYSDIRPVIDYYRVTNENRLLF
GAATPLVEHIPQDLKAWNRRLMLKIFPYLKDVKIDLAWGGPMACSPNLFPQIGTLPGRSN
AFFVQGYSGFGVTPSHIICKVLAEGMSEGSARYDLVSSIQRPTIIGKDAIRPLLLTAGKS
WHQLSGYWNGRR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory