Comparing Pf6N2E2_1493 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1493 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
53% identity, 87% coverage: 11:252/278 of query aligns to 1:240/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
55% identity, 87% coverage: 10:252/278 of query aligns to 1:240/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
52% identity, 86% coverage: 11:248/278 of query aligns to 3:238/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
52% identity, 86% coverage: 11:248/278 of query aligns to 3:238/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
52% identity, 86% coverage: 11:248/278 of query aligns to 3:238/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
52% identity, 86% coverage: 11:248/278 of query aligns to 3:238/242 of 2oljA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
47% identity, 88% coverage: 7:252/278 of query aligns to 2:257/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
49% identity, 85% coverage: 16:252/278 of query aligns to 7:253/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 81% coverage: 27:252/278 of query aligns to 21:245/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 81% coverage: 27:252/278 of query aligns to 22:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 81% coverage: 27:252/278 of query aligns to 22:246/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 81% coverage: 27:252/278 of query aligns to 22:246/344 of 6cvlD
Sites not aligning to the query:
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
42% identity, 72% coverage: 27:225/278 of query aligns to 21:223/232 of 1f3oA
Sites not aligning to the query:
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
42% identity, 71% coverage: 27:223/278 of query aligns to 23:218/330 of P9WQK5
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
39% identity, 75% coverage: 10:218/278 of query aligns to 3:214/648 of P75831
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
41% identity, 72% coverage: 27:225/278 of query aligns to 21:223/230 of 1l2tA
Sites not aligning to the query:
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
41% identity, 72% coverage: 11:211/278 of query aligns to 3:206/226 of 5xu1B
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
41% identity, 73% coverage: 26:228/278 of query aligns to 23:224/650 of 5ws4A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 83% coverage: 10:241/278 of query aligns to 16:241/378 of P69874
Sites not aligning to the query:
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
33% identity, 85% coverage: 12:248/278 of query aligns to 11:252/257 of P0AAH0
Sites not aligning to the query:
>Pf6N2E2_1493 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1493
MPSTETVAEPLVSLRDLHLSFGSNPVLKGIDLDVRRGEAVSIIGPSGSGKSTILRCITGL
LQPQRGSIRVGATEVHALAQEAQRIELRKRVGFVFQQYNLFPHLSVLENLVIAPRKVLGR
NRAAAEKDARALLAKVRMEHKADAYPGQLSGGQQQRVAIARALAMRPELILFDEVTSALD
PETVGEVLTVIRELTEEGMTCVLVTHEMRFAEEISDVVYFTENGVIVEHGSAARIFQHPT
SERTREFLHHALGGPGRRPPIADDPYLLTNLSRYSLSV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory