Comparing Pf6N2E2_1701 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1701 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
49% identity, 93% coverage: 14:254/258 of query aligns to 6:238/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 88% coverage: 11:237/258 of query aligns to 1:232/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 88% coverage: 11:237/258 of query aligns to 1:232/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
34% identity, 87% coverage: 31:254/258 of query aligns to 18:235/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 87% coverage: 31:254/258 of query aligns to 18:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 87% coverage: 31:254/258 of query aligns to 18:235/238 of 6s8gA
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 87% coverage: 31:254/258 of query aligns to 18:235/235 of 6mhzA
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
32% identity, 87% coverage: 31:254/258 of query aligns to 19:236/241 of 6mbnA
Sites not aligning to the query:
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 86% coverage: 31:253/258 of query aligns to 18:234/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 86% coverage: 31:253/258 of query aligns to 18:234/234 of 4p31A
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
32% identity, 86% coverage: 31:252/258 of query aligns to 18:233/233 of 6b8bA
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 85% coverage: 26:245/258 of query aligns to 12:226/240 of 4ymuJ
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 87% coverage: 26:250/258 of query aligns to 14:231/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 87% coverage: 26:250/258 of query aligns to 14:231/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 87% coverage: 26:250/258 of query aligns to 14:231/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 87% coverage: 26:250/258 of query aligns to 14:231/242 of 2oljA
Sites not aligning to the query:
P34358 ABC transporter ced-7; Cell death protein 7 from Caenorhabditis elegans (see 2 papers)
29% identity, 81% coverage: 30:237/258 of query aligns to 562:759/1704 of P34358
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 86% coverage: 24:245/258 of query aligns to 11:226/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 93% coverage: 20:258/258 of query aligns to 23:249/378 of P69874
Sites not aligning to the query:
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
29% identity, 86% coverage: 14:234/258 of query aligns to 3:218/229 of 6z67B
>Pf6N2E2_1701 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1701
MTIAALAGTESRELLAVQDIEVIYDGAILAVAGVSLRVGQGDIVALLGANGAGKSTTLKA
ISGLVQADRAQVSRGRIVFQGRDTAGVAANLLARQGIVHVLEGRHVFAHLTVEDNLRSGG
FLRKPTRRALEQDLERIYAWFPRLKTKRKTQAGLTSGGEQQMLAIGRALMTKPRLVLLDE
PSMGLAPLLVEEIFAIVAQLNAQEGVSFLVAEQNINVALRHASYAYILENGRVVGEGDAT
ALAAREDIQHFYLGGKAG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory