SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Pf6N2E2_2394 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4gr5C Crystal structure of slgn1deltaasub in complex with ampcpp (see paper)
38% identity, 75% coverage: 5:60/75 of query aligns to 4:59/457 of 4gr5C

query
sites
4gr5C
F
 
F
D
 
E
R
 
E
E
 
Y
D
 
D
I
 
G
V
 
G
F
 
H
Q
 
V
V
 
V
V
 
L
V
 
T
N
 
D
H
 
A
E
 
L
E
 
G
Q
 
R
Y
 
H
S
 
S
I
 
L
W
 
W
P
 
P
D
 
A
Y
 
G
K
 
I
A
 
A
V
 
V
P
 
P
E
 
A
G
 
G
W
 
W
R
 
S
T
 
V
V
 
R
G
 
H
K
 
G
S
 
T
G
 
D
F
 
S
K
 
R
K
 
E
E
 
G
C
 
C
L
 
L
A
 
A
Y
 
H
I
 
I
E
 
E
E
 
H
V
 
H
W
 
W
T
 
T
D
 
D
M
 
L
R
 
R
P
 
P

Sites not aligning to the query:

Query Sequence

>Pf6N2E2_2394
MTSVFDREDIVFQVVVNHEEQYSIWPDYKAVPEGWRTVGKSGFKKECLAYIEEVWTDMRP
LSLRKKMEEQAAAAH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory