Comparing Pf6N2E2_261 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_261 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
3dmeA Crystal structure of conserved exported protein from bordetella pertussis. Northeast structural genomics target ber141
63% identity, 99% coverage: 3:366/369 of query aligns to 1:365/366 of 3dmeA
8w7fB Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase bound with fad and a sulfate ion (see paper)
29% identity, 92% coverage: 30:368/369 of query aligns to 30:407/412 of 8w7fB
Sites not aligning to the query:
8w78A Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase in complex with fad and 2-oxoglutarate (see paper)
29% identity, 92% coverage: 30:368/369 of query aligns to 30:405/410 of 8w78A
Sites not aligning to the query:
4x9mA Oxidized l-alpha-glycerophosphate oxidase from mycoplasma pneumoniae with fad bound (see paper)
27% identity, 96% coverage: 6:358/369 of query aligns to 5:357/384 of 4x9mA
P75063 Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (Mycoplasmoides pneumoniae) (see paper)
27% identity, 96% coverage: 6:358/369 of query aligns to 5:357/384 of P75063
>Pf6N2E2_261 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_261
LNVDFECVVVGAGVVGLAVAREMARAGHDVLLIEAAEAIGMGISSRNSEVIHAGIYYPLG
SLKAQLCVEGRHRLYTYCESHGVATRRLGKLIVATDQAQVGGLETLLERGLKNGVDDLRL
LDQEQAQALEPALACVAALYSPSTGIVDSHALMLALQGDAEAAGANIAFHTPLLGARIIT
GGFILELGGTAQMTLSCRLLINAAGLQAPALARRIEGLEMQWVPEDFLCKGNYFSLAGRA
PFRHLVYPAPEAAGLGIHMTLDLAGQARFGPDTEWVDCEDYRVDPARAEAFYPAIRNYWP
GLPDQSLQPAYSGIRPKISAPGEPARDFVISSEAEHRVPGLINLLGIESPGLTSCLAIAS
RVRQRIENL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory