Comparing Pf6N2E2_3238 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3238 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4) (see paper)
55% identity, 99% coverage: 1:329/331 of query aligns to 9:336/336 of A3QCW5
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
28% identity, 92% coverage: 25:330/331 of query aligns to 3:309/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
28% identity, 92% coverage: 25:330/331 of query aligns to 3:309/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
28% identity, 92% coverage: 25:330/331 of query aligns to 3:309/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
28% identity, 92% coverage: 25:330/331 of query aligns to 3:309/310 of 7bcnA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
28% identity, 92% coverage: 25:330/331 of query aligns to 4:310/310 of 7bbrA
Q0B2F6 Solute-binding protein Bamb_6123 from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) (see paper)
26% identity, 94% coverage: 4:314/331 of query aligns to 6:313/328 of Q0B2F6
4n17A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-galacturonate (see paper)
25% identity, 87% coverage: 28:314/331 of query aligns to 2:287/301 of 4n17A
4n15A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-glucuronate (see paper)
25% identity, 87% coverage: 28:314/331 of query aligns to 2:287/301 of 4n15A
4p8bA Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
26% identity, 90% coverage: 30:327/331 of query aligns to 6:310/314 of 4p8bA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
26% identity, 90% coverage: 28:326/331 of query aligns to 3:299/303 of 4pddA
P44542 Sialic acid-binding periplasmic protein SiaP; Extracytoplasmic solute receptor protein SiaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 2 papers)
27% identity, 93% coverage: 9:317/331 of query aligns to 7:314/329 of P44542
4mhfA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-glucuronate, space group p21 (see paper)
27% identity, 83% coverage: 50:325/331 of query aligns to 25:297/301 of 4mhfA
Sites not aligning to the query:
Q128M1 Solute-binding protein Bpro_3107 from Polaromonas sp. (strain JS666 / ATCC BAA-500) (see paper)
27% identity, 83% coverage: 50:325/331 of query aligns to 55:327/330 of Q128M1
Sites not aligning to the query:
4mijA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-galacturonate, space group p21 (see paper)
27% identity, 83% coverage: 50:325/331 of query aligns to 25:297/302 of 4mijA
Sites not aligning to the query:
3b50A Structure of h. Influenzae sialic acid binding protein bound to neu5ac. (see paper)
27% identity, 87% coverage: 29:317/331 of query aligns to 5:291/310 of 3b50A
2cexB Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
27% identity, 87% coverage: 29:317/331 of query aligns to 4:290/305 of 2cexB
Sites not aligning to the query:
2v4cA Structure of sialic acid binding protein (siap) in the presence of kdn (see paper)
27% identity, 87% coverage: 29:317/331 of query aligns to 5:291/309 of 2v4cA
7t3eA Structure of the sialic acid bound tripartite atp-independent periplasmic (trap) periplasmic component siap from photobacterium profundum (see paper)
27% identity, 80% coverage: 58:322/331 of query aligns to 34:295/300 of 7t3eA
Sites not aligning to the query:
2cexA Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
27% identity, 87% coverage: 29:317/331 of query aligns to 4:290/304 of 2cexA
Sites not aligning to the query:
>Pf6N2E2_3238 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3238
MLKPIWKTLLCTLALSAGGNALAAEPIVIKFSHVVGEQTPKGQGALMFKKLAEERLPGKV
KVEVYPNSTLYGDDKEMEALLLGEVQIIARSLAKFEQYTKSVQLFDLPFLFDDIPAVDRF
QQSPEGQKLLKSMESKNITGLAYWHNGMKQLSANKPLRTPEDARDLTFRIQTSAVLEEQF
KAVDAKAKPMIFSVVYQGLRTGLVNGTENTYSNFYNQKLNEVQKYVTESNHGILDYMLIT
TSDFWKGLPPDIRSELDKIVVESTAYANQEAERFNQQDKQHVLDAKTTEIITLTPEQRNA
WREKMKPVWAKFEQEIGPDLIKAAQASNKAQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory