Comparing Pf6N2E2_3404 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3404 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
32% identity, 86% coverage: 22:217/227 of query aligns to 18:213/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
30% identity, 90% coverage: 14:217/227 of query aligns to 10:213/214 of 4ymwC
>Pf6N2E2_3404 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3404
MISFFQQYPEYWSDWSARLLLGARVSAELSLTGFALAAMLGALLAWAMKSHSVWLKHAAV
FFIQGMRAVPLLALLLALYFTLPSLGLTLSGYWAGAIGLGLQGSAYVAEILRGGLDSLHR
GQREAAIATGLTPLQAFTAVIFPQAIRGMLPPLLNAYVSILKDSSLCALIATDELMLAAR
AIASESFLPMHIFLLVGLFYFVIAFPLSLLSRALEARFSRGRKTIRG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory