Comparing Pf6N2E2_3858 Amino acid ABC transporter, permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 95% coverage: 6:222/229 of query aligns to 8:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 94% coverage: 6:221/229 of query aligns to 8:214/214 of 4ymwC
>Pf6N2E2_3858 Amino acid ABC transporter, permease protein
MNWDVIIKWLPKLAQGATLTLELVAIAVLAGLLLAIPLGIARSSRLWQVRALPYAYIFFF
RGTPLLVQLFLVYYGLAQFEAVRSSAMWPYLRDPFWCATATMTLHTAAYIAEILRGAIQA
IPRGEIEAARALGMSRPKALFYIMLPRAARIGLPAYSNEVILMLKASALASTVTLLELTG
MARTIIARTYLPVEIFFAAGMFYLLMSYLLVQGFKQLERWLRVDACQGR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory