Comparing Pf6N2E2_388 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_388 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
27% identity, 42% coverage: 38:226/447 of query aligns to 54:222/444 of Q8NLB7
Sites not aligning to the query:
>Pf6N2E2_388 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_388
MQTSLLSNSETHHEHVDDEKKKSMKNVVAGSLFGTALETYDLYLYGTAAALIFAPLFFPG
TDEAVSRLASLASFAISFVARPLGSLVLGHFGDRIGRKKLLYLTLIIMGLSTVGIGLLPT
YASVGIWAPIMLCVLRFIQGFAFAGEYSGAVLMLLEHAPRRKRGFYAAINNIGPVFGFIA
SAGLLLIVSSLLSVEDFYKWGWRIPFIASLALLVVGVFVRSKVAESPVFEKTAEKRAVAK
GPDLSPAMRLFTKYPKQLLLVAGANICHFSTFYLFTVFALSYGQKELGLSNAFVLAVAMV
AICTHLVIVPFAGAMADRLGRRTMMLIGFAVTALAAFPFWHLFSTGQFLPMVLGSCLFMA
GYGLVYGAVPSFTGEAFGPSARFTGFAMATNVGGIIGGGTAPIVGAYLLSHYGSPYAISV
YTVVLAAISALCVYLSAETRTINITDE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory