Comparing Pf6N2E2_4172 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4172 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
49% identity, 100% coverage: 1:288/289 of query aligns to 47:340/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
49% identity, 100% coverage: 1:288/289 of query aligns to 48:341/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
49% identity, 100% coverage: 1:288/289 of query aligns to 48:341/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
49% identity, 100% coverage: 1:288/289 of query aligns to 48:341/344 of 6cvlD
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
49% identity, 68% coverage: 1:197/289 of query aligns to 44:237/241 of 4u00A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
45% identity, 69% coverage: 1:198/289 of query aligns to 45:240/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
45% identity, 69% coverage: 1:198/289 of query aligns to 45:240/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
45% identity, 69% coverage: 1:198/289 of query aligns to 45:240/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
45% identity, 69% coverage: 1:198/289 of query aligns to 45:240/242 of 2oljA
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
43% identity, 69% coverage: 1:198/289 of query aligns to 43:238/240 of 4ymuJ
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
41% identity, 68% coverage: 1:197/289 of query aligns to 48:254/258 of P02915
Sites not aligning to the query:
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
41% identity, 68% coverage: 1:197/289 of query aligns to 44:250/258 of 1b0uA
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
37% identity, 69% coverage: 1:198/289 of query aligns to 68:265/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
37% identity, 69% coverage: 1:198/289 of query aligns to 68:265/382 of 7aheC
Sites not aligning to the query:
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
45% identity, 56% coverage: 1:161/289 of query aligns to 44:202/219 of 8w6iD
Sites not aligning to the query:
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
45% identity, 56% coverage: 1:161/289 of query aligns to 44:202/222 of P0A9R7
Sites not aligning to the query:
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
45% identity, 56% coverage: 1:161/289 of query aligns to 44:202/218 of 8hd0A
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
37% identity, 67% coverage: 1:193/289 of query aligns to 68:260/260 of 7ahdC
Sites not aligning to the query:
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
43% identity, 55% coverage: 1:159/289 of query aligns to 45:201/220 of 8tzjA
Sites not aligning to the query:
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
38% identity, 61% coverage: 1:175/289 of query aligns to 44:216/222 of 8i6rB
Sites not aligning to the query:
>Pf6N2E2_4172 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4172
LLRLINRLEDSTGGKIIVDGEEVTALDASGLRRFRQQVGMIFQHFNLLASKTVADNVALP
LTLAGELSRSEIDQRVAELLARVGLSDHARKYPAQLSGGQKQRVGIARALATKPKILLCD
EATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDAGVIVEQGPV
AEVFLHPKHPTTKRFVQEDEQIDESEQRDDFAHVPGRIVRLTFQGDATYAPLLGTVARET
GVDYSILAGRIDRIKDTPYGQLTLAITGGDMEAAFARFTAADVHMEVLR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory