Comparing Pf6N2E2_4510 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4510 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
7d50B Spua mutant - h221n with glutamyl-thioester (see paper)
72% identity, 97% coverage: 1:250/258 of query aligns to 6:255/255 of 7d50B
7d53A Spua mutant - h221n with glu (see paper)
72% identity, 97% coverage: 2:250/258 of query aligns to 1:249/249 of 7d53A
7d4rB Spua native structure (see paper)
63% identity, 95% coverage: 4:247/258 of query aligns to 1:214/215 of 7d4rB
P76038 Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD; Gamma-Glu-GABA hydrolase; EC 3.5.1.94 from Escherichia coli (strain K12) (see paper)
44% identity, 96% coverage: 5:251/258 of query aligns to 8:252/254 of P76038
6vtvB Crystal structure of puud gamma-glutamyl-gamma-aminobutyrate hydrolase from e. Coli
44% identity, 96% coverage: 5:251/258 of query aligns to 6:250/252 of 6vtvB
3fijA Crystal structure of a uncharacterized protein lin1909
36% identity, 86% coverage: 23:244/258 of query aligns to 7:221/224 of 3fijA
O33341 Putative glutamine amidotransferase Rv2859c; EC 2.4.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
34% identity, 95% coverage: 5:250/258 of query aligns to 66:302/308 of O33341
2ywcA Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
27% identity, 52% coverage: 105:239/258 of query aligns to 70:180/475 of 2ywcA
Sites not aligning to the query:
>Pf6N2E2_4510 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4510
MSRLPLIGVTTCSRQIGLHAYHISGEKYSRAVATAAKGLPVLIPSLADLFPPSDILDALD
GILLTGSPSNVEPFHYQGPASAPGTAHDPARDATTLPLIRAAVDAGIPVLGICRGFQEMN
VAFGGSLHQKVHEVGTFIDHREDDTQAVDVQYGPAHAVHIQPGGVLAGLGLPQRIEVNSI
HSQGIERLAPGLRAEAVAPDGLIEAVSVPGGKAFALGVQWHPEWEVSSNPHYLAIFQAFG
DACRARAAQRDADASNNA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory